[GTOP][HELP][ORGANISMS][SEARCH][SUMMARY][COMMENT/QUESTION(gtop-admin@spock.genes.nig.ac.jp)]

Result of RPS:PDB for bsub0:CAB13391.1

[Show Plain Result]

#ERROR : Can't open dsspfile "1e8cB.bssp"
#ERROR : Can't open dsspfile "1e8cA.bssp"
#ERROR : Can't open dsspfile "2am1A.bssp"
#ERROR : Can't open dsspfile "2cb4A.bssp"
#ERROR : Can't open dsspfile "3eagA.bssp"
#ERROR : Can't open dsspfile "1eehA.bssp"
#ERROR : Can't open dsspfile "2atmA.bssp"
#ERROR : Can't open dsspfile "1e0dA.bssp"
#ERROR : Can't open dsspfile "3cr8B.bssp"
#ERROR : Can't open dsspfile "2b7oA.bssp"
#ERROR : Can't open dsspfile "2bogX.bssp"

## Summary of PDB Search
:494
    1e-93  36%  1e8cB  [c.98.1 - c.72.2 - c.59.1]
    7e-93  35%  1e8cA  [c.98.1 - c.72.2 - c.59.1]
    2e-74  21%  2am1A  [x.x.x] UDP-N-ACETYLMURAMOYLALANINE-D-GLUTAMYL-LYSINE-D-
    6e-43   7%  2cb4A  [x.x.x] MOSQUITOCIDAL TOXIN
    7e-39  16%  3eagA  [x.x.x] UDP-N-ACETYLMURAMATE:L-ALANYL-GAMMA-D-GLUTAMYL-
    2e-38  26%  1eehA  [c.5.1 - c.72.2 - c.59.1]
    5e-35   7%  2atmA  [x.x.x] HYALURONOGLUCOSAMINIDASE
    2e-34  23%  1e0dA  [c.5.1 - c.72.2 - c.59.1]
    9e-17   8%  3cr8B  [x.x.x] SULFATE ADENYLYLTRANFERASE, ADENYLYLSULFATE
    4e-15  10%  2b7oA  [x.x.x] 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE
    1e-11   8%  2bogX  [x.x.x] ENDOGLUCANASE E-2
:494

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxxxxxxxxxxxxxxxxxDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAERE
1e8cB           --------------------PSRALRETLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEEI
1e8cA           --------------------PSRALRETLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGKDEATDGEI
2am1A           --------------------DTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKE
2cb4A           ----------------------------------------------------------------------
3eagA           -------------------------------------------AGFEVSGCDPSTQLEALGIDVYEGFDA
1eehA           ----------------------------------------------------------------------
2atmA           ----------------------------------------------------------------------
1e0dA           ----------------------------------------------------------------------
3cr8B           ----------------------------------------------------------------------
2b7oA           ----------------------------------------------------------------------
2bogX           ----------------------------------------------------------------------


                         .         .         *         .         .         .         .:140
query           VDVNVPVIIVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKRTGLIGTMYMK
1e8cB           REHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISGTVGNGLLG
1e8cA           REHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISGTVGNGLLG
2am1A           VS-NHPYILVDDVLTAFQSLASYYLEKTTVDV--FAVTGSNGKTTTKDLAHLLSTRYKTYKTQGNY----
2cb4A           ------------------------------PKDNTWIQAASLTWLDSSLLYQLISTRIPSFASPNGLHRE
3eagA           AQLGDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASLAWVLEYAGLAPGFLIGGVPEN
1eehA           -------------------------------------TGSNGKSTVTTLVGEMAKAAGVNVGVGGN----
2atmA           ----------------------------------------------------------------------
1e0dA           ------------------------------------ITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP
3cr8B           ----------------------------------------------------------------------
2b7oA           ----------------------------------------------------------------------
2bogX           ----------------------------------------------------------------------


                         +         .         .         .         .         *         .:210
query           IGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKT
1e8cB           KV---IPTENTTGSAVDVQHELAGLVDQG-ATFCAEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGD
1e8cA           KV---IPTENTTGSAVDVQHELAGL-VDQGATFCAEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGD
2am1A           NNE--------------IGLPYTVLHPEGTEKLVLEGQDHLGDIHLLSEARPKTAIVTLVGEAHLAFFKD
2cb4A           QTIDSN--------------TGQIQIDNEHRLLRWDRRPPNDIFLNGFIPRVTNQNLSPVEDTHLLNYLR
3eagA           FGVSARLPQTPRQDPNSQSPFF-------VIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFAD
1eehA           IGLPAL-----------------MLLDDECELYVLEL--SSFQLETTSSLQAVAATILNVTEDHMDRPFG
2atmA           -----------------------------------------------------FNIYWNVPTFMCHQYDL
1e0dA           ---------------------ALMLLDDECELYVLELSSF-------QLETTSSLQAVAATILNVTEDFG
3cr8B           --------QLIEPYGGTLVNLIDPEKREALKHEALSLPSLDLDWQQQCELEMMTGAYSPLTGTRAQCARV
2b7oA           ----------------------------------------------------------------------
2bogX           ----------------------------------------------------------------------


                         .         .         .         +         .         .         .:280
query           MDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYFEKVTAAHISTYGIKNDADVMAKNISITAQGT
1e8cB           EHYEAAWLLYSE---------HHCGQAIINADDEVGRRWLAKLPDAVAVSEDHIGRWLKATEVNYHDSGA
1e8cA           EHYEAAWLLYSE---------HHCGQAIINADDEVGRRWLAKLPDAVAVSEDHINRWLKATEVNYHDSGA
2am1A           RSEIAKGKQIAD---------GASGSLLLAPADP---IVEDYLPIDKKVVRFGQGAELEITDLVERKDSL
2cb4A           TNSPSIFV--------------STTRARYNNLGLEITPWTPHSANIIYRYEIFAPGGIDINASFSNPFPN
3eagA           LGAIQTQFHYLVR------TVPSEGLIVCNGRQQSLQDTDKGCWTPVEKFGTEHGWQ-----AGEANADG
1eehA           LQQYRAAKLRIY---------ENAKVCVVNADDALTMPIRGADERCV-SFGV-NMGDYHLTWLRVKGEKV
2atmA           YFDEVTNFNIKRNSKDDFQGD-----KIAIFYDPFPALLSLKDGKYKKRNGHLQKFIENLDKIYPNRNFS
1e0dA           LQQYRAAKL---------RIYENAKVCVVNADDA---LTMPIADERCVSFGV----NMGDYHLNHQQGET
3cr8B           ESAQQLDDGSFWPSPITLTSRDRALADRRPGERLA-----------------------------------
2b7oA           ----------------------------------------------------------------------
2bogX           ----------------------------------------------------------------------


                         .         *         .         .         .         .         +:350
query           SFDLVTNKGTKHITMSLVGQFNVYNVLAAVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVIV
1e8cB           TIRFS-SSWGDGEIESHLGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGREVFTAPGK-PTVVV
1e8cA           TIRFSSSWGD-GEIESHLGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGREVFTAPGK-PTVVV
2am1A           TFKA--NFLEQALDLPVTGKYNATNAIASYV-ALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADILS
2cb4A           EDQITFPGGIRPEFIRSTYEYHNGEIVRIWINPNFINPSTLNDVSGPSNISKVFWHENHSEG-----NND
3eagA           SFDVLL-DGKTAGRVKWDLGRHNRNALAVIAAARHVGVDIQTACEALGAFKNV-KR--------------
1eehA           LN---------VKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWIN
2atmA           GIGVIDFERWRPFRQNWGNMKIHKNFSIDLVRNEHPTWNKKIELEASKRFEKYARFFMEEADWGYYGYPY
1e0dA           WLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWIN
3cr8B           ----------------------------------------------------------------------
2b7oA           ------------------------------------------------------------QVIANPVGVK
2bogX           -----------------VIRDRIASVPQGTWFAHHNPGQITGQVDALMSAAQAAGKIPIL-VVSNAPGRD


                         .         .         .         .         *         .         .:420
query           DYAHTPDSLENVLETCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILR
1e8cB           DYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLGAIAE-EFADVAVVTDDNPRTEEPRAIIN
1e8cA           DYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRP-LGAIAEEFADVAVVTDDNPRTEEPRAIIN
2am1A           DVYNANPTAKLILETFSAIEGGKKIAVLADKGDQSVQLHNQILSLSPDVLDIVIFYGEDIAQLAQLASQF
2cb4A           SYNQDFDFAPNGE---------------------------------------------------------
3eagA           ----------------------------------------------------------------------
1eehA           DSKATVGSTEAALNGLH--VDGTLHLLLG-GDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPE--
2atmA           CFNMSPNNLVPECDVTAMHENDKMSWLFNNQNVLL-----------------------------------
1e0dA           SKATNVGSTEAALNGLH--VDGTLHLLLG-GDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPE--
3cr8B           ----------------------------------------------------------------------
2b7oA           LGPNTPELAVEYVERLDPHNKPGRLTLVSRGNHKVRDLLPPIGHQVIWQCDPTHESSTGFKTRHFDRIVD
2bogX           CGAPSHSAYRSWIDEFAAGLKNRPAYII------------------------------------------


                         .         .         +         .         .         .         .:490
query           DMEAGVENAYYHSIANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGNETFDFDDAEVAARAIVELNKN
1e8cB           DILAGLDAGHAK-VEGRAEAV-TCAVQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIARS
1e8cA           DILAGLDAGHAK-VEGRAEAV-TCAVQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIAR-
2am1A           PIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSNLAK-------------------------
2cb4A           ----------------------------------------------------------------------
3eagA           ----------------------------------------------------------------------
1eehA           ---------VAEQTETMEQAMRLLAPRVQPGDMVLLSPACLDQFKNFEQRGNEFARLAKE----------
2atmA           ----------------------------------------------------------------------
1e0dA           ---------VAEQTETMEQAMRLLAPRVQPGDMVLLSPACLDQFKNFEQRGNEFARLAKE----------
3cr8B           ----------------------------------------------------------------------
2b7oA           EVQGFFEVHRALLAGRYETACDPRLNTQQSLELAFLVAELRD----------------------------
2bogX           ----------------------------------------------------------------------


                         *         .         .         .         .         +         .:560
query           Kxxx
1e8cB           H---
1e8cA           ----
2am1A           ----
2cb4A           ----
3eagA           ----
1eehA           ----
2atmA           ----
1e0dA           ----
3cr8B           ----
2b7oA           ----
2bogX           ----