[GTOP][HELP][ORGANISMS][SEARCH][SUMMARY][COMMENT/QUESTION(gtop-admin@spock.genes.nig.ac.jp)]

Result of RPS:SCP for bsub0:CAB13610.1

[Show Plain Result]

#ERROR : Can't open dsspfile "1a2qA.bssp"
#ERROR : Can't open dsspfile "1wmdA2.bssp"
#ERROR : Can't open dsspfile "1ga1A.bssp"
#ERROR : Can't open dsspfile "1ot5A2.bssp"
#ERROR : Can't open dsspfile "1v6cA.bssp"
#ERROR : Can't open dsspfile "2gmhA2.bssp"
#ERROR : Can't open dsspfile "1r6vA.bssp"
#ERROR : Can't open dsspfile "2ocdA1.bssp"
#ERROR : Can't open dsspfile "1gt91.bssp"

## Summary of PDB Search
:442
    7e-53  44%  1a2qA  [c.41.1.1] SUBTILISIN BPN'
    2e-45  30%  1wmdA2 [c.41.1.1] PROTEASE A:1 -- 318
    2e-42  16%  1ga1A  [c.41.1.2] SERINE-CARBOXYL PROTEINASE
    5e-38  24%  1ot5A2 [c.41.1.1] KEXIN A:123 -- 460
    3e-36  21%  1v6cA  [c.41.1.1] ALKALINE SERINE PROTEASE
    2e-19  19%  2gmhA2 [d.16.1.8] ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE A:237
    3e-19  22%  1r6vA  [c.41.1.1] SUBTILISIN-LIKE SERINE PROTEASE
    3e-16  10%  2ocdA1 [c.88.1.1] L-ASPARAGINASE I A:2 -- 337
    1e-07  23%  1gt91  [c.41.1.2] KUMAMOLYSIN
:442

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSVIIEFEEGCHETGFQM
1a2qA           ----------------------------------------------------------------------
1wmdA2          ----------------------------------------------------------------------
1ga1A           ----------------------------------------------------------------------
1ot5A2          ----------------------------------------------------------------------
1v6cA           ----------------------------------------------------------------------
2gmhA2          ----------------------------------------------------------------------
1r6vA           -----------------------------------------------------KILVGYNDRSEVDKIVK
2ocdA1          ----------------------------------------------------------------------
1gt91           ----------------------------------------------------------------------


                         .         .         *         .         .         .         .:140
query           AGEVLQKEKRSKLKSRFNKINCCSAEVTPSALHSLLSECSNIRKVYLNREVKALLDTATEASHAKEVVRN
1a2qA           ----------------------------------------------------------------------
1wmdA2          -------------------------------------------------------DVARGIVKADVA-QS
1ga1A           ----------------------------------------------------------------------
1ot5A2          ----------------------------------------------------------------------
1v6cA           ----------------------------------------------------------------------
2gmhA2          ----------------------------------------------------------------------
1r6vA           AVNGKVVLELPQIKVVSIKLNGMTVKQAYDKIKALVKPNPDMYKIRKPGLNSTARDYGEELSNEGVTQQL
2ocdA1          ----------------------------------------------------------------------
1gt91           ----------------------------------------------------------------------


                         +         .         .         .         .         *         .:210
query           GQTLTGKGVTVAVVDTGIYPHPDLEGRIIGFADMVNQKTEPYDDNGHGTHCAGDVXXXXXXXXXQYRGPA
1a2qA           -QGYCGSNVKVAVIDSGISSHPDL--KVAGGASMVPSETNPFQDNSHGTHVAGTVAALNNSIG--VLGVA
1wmdA2          SYGLYGQGQIVAVADTGLDTRNDSSMHEAFRGKITALYALANDTNGHGTHVAGSVLGNGST----NKGMA
1ga1A           -SAPTAANTTVGIITIGGVSTLQDLQQFTSANGLASVNTQGSSNGDYSDDQQGQGEWDLDSQSI--VGSA
1ot5A2          -NNITGAGVVAAIVDDGLDYNEDLKDNFCAEGDNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFC-GVGVG
1v6cA           ----QAGNRTICIIDSGYDRHNDLNANNVTGTNNTGNWYQPGNNNAHGTHVAGTIAAIANNEGVVGVMPN
2gmhA2          ----------------------------------------------------------------------
1r6vA           WEEASGTNIIVAVVDTGVGTHPDLEGQVPAFDEELPAGTDSSYGGSAGTHVAGTI--AAKKDGKGIVGVA
2ocdA1          --------------------TLFFNNRLXRGNRSRKS--HADGFSAFSSPNLP-PLLEAGINIELSTNVK
1gt91           ---LDGQGQCIAIIELGGYDETSLAFASLGVSAPQVVSVSVNQPTGDPNGPDGEV-----ELDIEVAGAA


                         .         .         .         +         .         .         .:280
query           PEANLIGVKVLNKQGSGTLADIIEGVEWCIQYNEDNPDEPIDIMSMSLGGDALRYDHEQEDPLVRAVEEA
1a2qA           PCASLYAVKVLGADGSGQYSWIINGIEWAIANN-------MDVINMSLGGPS------GSAALKAAVDKA
1wmdA2          PQANLVFQSIMDSGGGGLPSNLQTLFSQAYSAG-------ARIHTNSWGAA---VNGAYTTDSRNVDDYV
1ga1A           GGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNV------AKVINVSLGWEADANADGTLQAEDRIFATA
1ot5A2          YNAKISGIRILS--GDITTEDEAASLIYGLDVNIYSCSWGPADDGRHLQGPS---DLVKKALVKGVTEGR
1v6cA           QNANIHIVKVFNEAGWGYSSSLVAAIDTCVN------SGGANVVTMSLGGSG------STTTERNALNTH
2gmhA2          ----------------------------------------------------------------------
1r6vA           PGAKIMPIVIFDDPALVGGNGYV-GDDYVAAGIIWATDHGAKVMNHSWGGW------GYSYTMKEAFDYA
2ocdA1          VDEKPSGEFKVNPITPQPIGVITXYPGISIRNTLLQPVNAXILLTFGVGN------APQNPELLAQLKAA
1gt91           PGAKIAVY-----FAPNTDAGFL---NAITTAVHDPTHKP-SIVSISWGGPEDSWAPASIAAMNRAFLDA


                         .         *         .         .         .         .         +:350
query           WSAGIVVCVAAGNSGPDSQTIASPGVSEKVITVGXXXXXXXXXXXXXXVASFSSRGPTVYGKEKPDILAP
1a2qA           VASGVVVVAAAGNEGTSSSTVGYPAKYPSVIAVGA-------------VDSSNQRASFSSVGPELDVMAP
1wmdA2          RKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNAQFSSRGPTKDGRIKPDVMAP
1ga1A           AAQGQTFSVSSGDEGVYECSVSWPASSPNVIAVGLWATGGGYSVYESKPSWQSVVSGTPGRRLLPDISFD
1ot5A2          DSKGAIYVFASGNGGGDNCNYDGYTNSIYSITIGAIDHKDL-------HPPYSEGCSAVM-AVTYSSGSG
1v6cA           YNNGVLLIAAAGNAGDSS--YSYPASYDSVMSVA-------AVDSNLDHAAFSQYTDQV------EISGP
2gmhA2          -------------------------------------------------------GLKELWVIDEKKWKP
1r6vA           MEHGVVMVVSAGNNTSDSHHQYPAPGVIQVAAL-------DYYGGTFRVAGFSSRSDGVSVGAPGVTILS
2ocdA1          SERGVIVVNLTQCLAGKVNXGGCALADAGVISGY------------------------------------
1gt91           AALGVTVLAAAGDSGDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVPPSANPGAGSGRGVPDVPAT


                         .         .         .         .         *         .         .:420
query           GVNIISLRSPNSYIDKLQKSSRVGSQYFTMSGTSMATPICAGIAALILQQNPDLTPDEVKELLKNGTDKW
1a2qA           GVSIQS--------------TLPGNKYGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL
1wmdA2          GTFILSARSSLAPDSS--FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKALIAGAADIG
1ga1A           AAQGTG------------ALIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSPAASFYSAISSTPSLV
1ot5A2          EYIHSS--------------DINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGL
1v6cA           GEAILSTVTVGEG----------RLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECT
2gmhA2          GRVDHTVGWPLD--------RHTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKHIKPTL
1r6vA           TVPGED--SIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDF
2ocdA1          ----------------------------------------------------------------------
1gt91           GYEVV-----------------IDGETTVIGGTSAVAPLFAALVARINQKL-------------------


                         .         .         +         .         .         .         .:490
query           KDEDPNIYGAGAVNAENSVPGQ
1a2qA           --GDSFYYGKGLINVQ------
1wmdA2          LGYPNGNQGWGRVTLDKSL---
1ga1A           HDVKDYPTGWGSLDIAKLS---
1ot5A2          EKNASHRYGFGKIDAHKLI---
1v6cA           VNGTSFSCGNMANKICLVERVG
2gmhA2          EGGKRIAYGARALN--------
1r6vA           NG--------------------
2ocdA1          ----------------------
1gt91           ----------------------