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Result of RPS:PDB for cimm2:CIRT_01234

[Show Plain Result]

#ERROR : Can't open dsspfile "3bkzA.bssp"
#ERROR : Can't open dsspfile "3btyA.bssp"
#ERROR : Can't open dsspfile "3bi3A.bssp"
#ERROR : Can't open dsspfile "3bieA.bssp"
#ERROR : Can't open dsspfile "3bu0A.bssp"
#ERROR : Can't open dsspfile "3btzA.bssp"
#ERROR : Can't open dsspfile "3btxA.bssp"
#ERROR : Can't open dsspfile "3dkqA.bssp"

## Summary of PDB Search
:388
    3e-15  23%  3bkzA  [x.x.x] ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB
    9e-15  16%  3btyA  [x.x.x] ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB
    6e-14  24%  3bi3A  [x.x.x] ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB
    1e-13  29%  3bieA  [x.x.x] ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB
    3e-12  23%  3bu0A  [x.x.x] ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB
    7e-12  22%  3btzA  [x.x.x] ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB
    2e-11  24%  3btxA  [x.x.x] ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB
    4e-06  14%  3dkqA  [x.x.x] PKHD-TYPE HYDROXYLASE SBAL_3634
:388

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
3bkzA           ----------------------------------------------------------------------
3btyA           ----------------------------------------------------------------------
3bi3A           ----------------------------------------------------------------------
3bieA           ----------------------------------------------------------------------
3bu0A           ----------------------------------------------------------------------
3btzA           ----------------------------------------------------------------------
3btxA           ----------------------------------------------------------------------
3dkqA           ----------------------------------------------------------------------


                         .         .         *         .         .         .         .:140
query           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
3bkzA           ----------------------------------------------------------------------
3btyA           ----------------------------------------------------------------------
3bi3A           ----------------------------------------------------------------------
3bieA           ----------------------------------------------------------------------
3bu0A           ----------------------------------------------------------------------
3btzA           ----------------------------------------------------------------------
3btxA           ----------------------------------------------------------------------
3dkqA           ----------------------------------------------------------------------


                         +         .         .         .         .         *         .:210
query           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSFFRDDPTRTFSPKDATVHRPLSIQAAL
3bkzA           ------------------------------------------DINDVASQSPFRQMVTPGGYTMSVAMTN
3btyA           --------------------------------------------------EKEVEYFTGALARVQVFGKW
3bi3A           ------------------------------------------DINDVASQSPFRQMVTPGGYTMSVAMTN
3bieA           ----------------------------------------------------------------------
3bu0A           ----------------------------------------------------------------------
3btzA           ----------------------------------------------------------------------
3btxA           ----------------------------------------------------------------------
3dkqA           ----------------------------------------------------------------------


                         .         .         .         +         .         .         .:280
query           NSKLRWITLGGQYNWTTKEYPPGPPPAFPSDISTLLHSIFPETTAEAAIVNLYSPGDTLNPHRDVSEECD
3bkzA           CGHLGWTTHRQGYLYSPIDPQTNKPPAMPQSFHNLCQRAATAAQPDACLINRYAPGAKLSLHQDKCEPLR
3btyA           HSVPRKQATYGDAGLTYTTLSPKPWIPVLERIRDHVSG-VTGQTFNFVLINRYKDGSDHICEHRRELAPG
3bi3A           CGHLGWTTHRQGYLYSPIDPQTNPWPAMPQSFHNLCQRAYPDFQPDACLINRYAPGAKLCLHQDDEPDLR
3bieA           --HLGWTTHRQGYLYSPIDPQTNPWPAMPQSFHNLCQRAYPDFQPDACLINRYAPGAKLCLHQDKDEDLR
3bu0A           --VPRKQATYGDAGLTYTTLSPKPWIPVLERIRDHVSG-VTGQTFNFVLINRYKDGDHIGEHRDDCRELA
3btzA           --QATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSG-VTGQTFNFVLINRYKDGDHIGEHRDDCRELA
3btxA           -SVPRKQATYGDAGLTYLTLSPKPWIPVLERIRDHVSG-VTGQTFNFVLINRYKDGDHIGEHRDDCRELA
3dkqA           ----DGNQTSGAATTRKRNQQLDKDDPVAVALGQQIDRLALPLQFYPPLFNRYQGGETFGYHIDNAIRST


                         .         *         .         .         .         .         +:350
query           TGLISISLGCHALFLVGHGNGDSCAVIRLRSGDAVYMTGASRFAWHAVPKIIPSTCPDWLKTWPGGGDVP
3bkzA           APIVSVSLGLPAIFQFGGLKRNDPLKLLLEHGDVVVWGGESRLFYHGIQPLKAGFHP-------------
3btyA           SPIASVSFGASRDFVFRHKDSRPSVRLPLAHGSLLMMNHPTNTHWHSLPVRKKVLAP-------------
3bi3A           APIVSVSLGLPAIFQFGGLKRDPLKRLLLEHGDVVVWGGESRLFYHGIQPL-------------------
3bieA           APIVSVSLGLPAIFQFGGKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHP-------------
3bu0A           PGIASVSFGASRDFVFRHKDSRGKSPLPLAHGSLLMMNHPTNTHWHSLPVR-------------------
3btzA           PGIASVSFGASRDFVFRHKDSRGKSRLPLAHGSLLMMNHPTNTHWHSLPVR-------------------
3btxA           PGIASVSFGASRDFVFRHKDSRGKSPLPLAHGSLLMMNHPTNTHWHSLPVR-------------------
3dkqA           PDDLSATLFLSEPENYQGGDTYGQQSIKLSAGSLVLYPSSS---LHQVTPVLSGE---------------


                         .         .         .         .         *         .         .:420
query           DEDSQRWWGWMAGKRVNLNVRQMxxxxxxxxxxxxxxx
3bkzA           --------------------------------------
3btyA           --------------------------------------
3bi3A           --------------------------------------
3bieA           ---------LTIDCRYNLTFRQA---------------
3bu0A           --------------------------------------
3btzA           --------------------------------------
3btxA           --------------------------------------
3dkqA           --------------------------------------