[GTOP][HELP][ORGANISMS][SEARCH][SUMMARY][COMMENT/QUESTION(gtop-admin@spock.genes.nig.ac.jp)]

Result of BLT:PDB for cper0:ctrA

[Show Plain Result]

#ERROR : Can't open dsspfile "1vcmA.bssp"
#ERROR : Can't open dsspfile "1vcoA.bssp"
#ERROR : Can't open dsspfile "1s1mA.bssp"
#ERROR : Can't open dsspfile "1s1mB.bssp"
#ERROR : Can't open dsspfile "1vcnA.bssp"
#ERROR : Can't open dsspfile "2c5mC.bssp"
#ERROR : Can't open dsspfile "2v4uA.bssp"
#ERROR : Can't open dsspfile "2vktA.bssp"
#ERROR : Can't open dsspfile "2c5mD.bssp"
#ERROR : Can't open dsspfile "2c5mB.bssp"
#ERROR : Can't open dsspfile "2c5mA.bssp"
#ERROR : Can't open dsspfile "2w7tA.bssp"
#ERROR : Can't open dsspfile "2vo1B.bssp"
#ERROR : Can't open dsspfile "2vo1A.bssp"
#ERROR : Can't open dsspfile "3ihlA.bssp"
#ERROR : Can't open dsspfile "3ihlB.bssp"

## Summary of PDB Search
:535
    e-163  57%  1vcmA  [c.37.1 - c.23.16] CTP SYNTHETASE
    e-162  57%  1vcoA  [c.37.1 - c.23.16] CTP SYNTHETASE
    e-155  51%  1s1mA  [c.37.1 - c.23.16] CTP SYNTHASE
    e-155  51%  1s1mB  [c.37.1 - c.23.16] CTP SYNTHASE
    e-146  56%  1vcnA  [c.37.1 - c.23.16] CTP SYNTHETASE
    2e-57  48%  2c5mC  [x.x.x] CTP SYNTHASE
    5e-50  48%  2v4uA  [x.x.x] CTP SYNTHASE 2
    1e-48  48%  2vktA  [x.x.x] CTP SYNTHASE 2
    2e-45  46%  2c5mD  [x.x.x] CTP SYNTHASE
    8e-45  45%  2c5mB  [x.x.x] CTP SYNTHASE
    1e-44  45%  2c5mA  [x.x.x] CTP SYNTHASE
    2e-41  41%  2w7tA  [x.x.x] PUTATIVE CYTIDINE TRIPHOSPHATE SYNTHASE
    9e-41  46%  2vo1B  [x.x.x] CTP SYNTHASE 1
    1e-40  46%  2vo1A  [x.x.x] CTP SYNTHASE 1
    2e-40  40%  3ihlA  [x.x.x] CTP SYNTHASE 2
    4e-40  41%  3ihlB  [x.x.x] CTP SYNTHASE 2
:535

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxTKYVFVTGGVVSSLGKGITAASLGRLLKNRGLSVSIQKFDPYLNIDPGTMSPYQHGEVFVTDDGAE
1vcmA           -----KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAE
1vcoA           -----KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAE
1s1mA           ----TNYIFVTGGVVXXXXXXXXXXXXXXXXXXXXLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAE
1s1mB           ----TNYIFVTGGVVXXXXXXXXXXXXXXXXXXXXLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAE
1vcnA           -----KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTM-----GEVFVTADGAE
2c5mC           -----------------------------ILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGE
2v4uA           ----------------------------------------------------------------------
2vktA           ----------------------------------------------------------------------
2c5mD           -----------------------------ILKSCGLHVTSIKIDPYINIDAG------------------
2c5mB           -----------------------------ILKSCGLHVTSIKIDPYINIDAGT-----------------
2c5mA           -----------------------------ILKSCGLHVTSIKIDPYINIDA-------------------
2w7tA           ----------------------------------------------------------------------
2vo1B           -----------------------------ILKSCGLHVTSIKIDPYINID--------------------
2vo1A           -----------------------------ILKSCGLHVTSIKIDPYINID--------------------
3ihlA           -----KYILVTXXXXXXXXXXXXXXXXXXXLKSCGLRVTAIKIDPYININ--------------------
3ihlB           -----KYILVTXXXXXXXXXXXXXXXXXXXLKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDG--


                         .         .         *         .         .         .         .:140
query           TDLDLGHYERFIDENLTQNSNVTSGRVYWSVISKERKGEYLGGTVQVIPHITNAIKDRVHRVGKERDXXX
1vcmA           TDLDIGHYERFLDMDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEI
1vcoA           TDLDIGHYERFLDMDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEI
1s1mA           TDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVL
1s1mB           TDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVL
1vcnA           TDLDIGHYERFLDMDLSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEI
2c5mC           ------------DIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALEPQVCV
2v4uA           ----------------------------------------------------------------------
2vktA           ----------------------------------------------------------------------
2c5mD           ---------------LTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALEPQVCV
2c5mB           ----------------TKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQAPVDEPQV
2c5mA           ----------------TKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPEPQV
2w7tA           ----------------------------------------------------------------------
2vo1B           --------------------NLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQAPGLEPQV
2vo1A           -------------------NNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRIPVDEDGLE
3ihlA           --------------------NITTGKIYQHVINKERRGDYLGKTVQVVPHITDAVQEKVPVDGNKEEPQI
3ihlB           ------------------------------------------GEVQVVPHITDAVQEKVPVDGNKEEPQI


                         +         .         .         .         .         *         .:210
query           XXXXXXXXXXXXXSLPFLEAIRQIKYDVGKENVCFIHVTLVPYLGKAGELKTKPTQHSVKELRSIGIQPD
1vcmA           XXXXXXXXXXDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLSE--EFKTKPTQHSVATLRGVGIQPD
1vcoA           XXXXXXXXXXDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPD
1s1mA           VEIGGTVGDIE--SLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPD
1s1mB           VEIGGTVGDIE--SLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPD
1vcnA           XXXXXXXXXXDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPD
2c5mC           IELGGTVGDIE--SMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPD
2v4uA           ----------------------------------------------------------------------
2vktA           ----------------------------------------------------------------------
2c5mD           IELGGTVGDIE--SMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPD
2c5mB           CVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPD
2c5mA           CVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPD
2w7tA           ----------------------------------------------------------------------
2vo1B           CVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQ--PSGEQKTKPTQNSVRELRGLGLSPD
2vo1A           PQVCVIELGGTVGSMPFIEAFRQFQFKVKRENFCNIHVSLVPQ-PSSGEQKTKPTQNSVRELRGLGLSPD
3ihlA           CVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHVSLVPQLSATGEQKTKPTQNSVRALRGLGLSPD
3ihlB           CVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHVSLVPQLSATGEQKTKPTQNSVRALRGLGLSPD


                         .         .         .         +         .         .         .:280
query           IIVCRSEKELSEDIKKKIGLFCNIDASEVIQNLDAEHLYAVPLMLHKEGLDRLVCEKLGLGCRDIDNAEW
1vcmA           ILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQGLGRAVERALGLEAVIPNLSFW
1vcoA           ILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQGLGRAVERALGLEAVIPNLSFW
1s1mA           ILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW
1s1mB           ILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW
1vcnA           ILVLRSARPVPEEVRRKVALFTNVRPGHVFSS-PTVHLYEVPLLLEEQGLGRAVERALGLEAVIPNLSFW
2c5mC           LVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDL----------
2v4uA           ----------------------------------------------------------------------
2vktA           ----------------------------------------------------------------------
2c5mD           LVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDL----------
2c5mB           LVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDL----------
2c5mA           LVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDL----------
2w7tA           ----------------------------------------------------------------------
2vo1B           LVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDL----------
2vo1A           LVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDL----------
3ihlA           LIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSTYRVPVLLEEQSIVKYFKERLHL----------
3ihlB           LIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSTYRVPVLLEEQSIVKYFKERLHL----------


                         .         *         .         .         .         .         +:350
query           IDMVHRITHLTHTTKIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLSGVD
1vcmA           QEAVRVLKHPERTVKIAIAGKYVP--DAYLSLLEALRHAGIKNRARVEVKWVDAESAA--DLDEAFRDVS
1vcoA           QEAVRVLKHPERTVKIAIAGKYV---DAYLSLLEALRHAGIKNRARVEVKWVDAESLA--DLEEAFRDVS
1s1mA           EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGV-EILKGLD
1s1mB           EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGV-EILKGLD
1vcnA           QEAV-RVLHPERTVKIAIAGK----PDAYLSLLEALRHAGIKNRARVEVKWVDA----AADLDEAFRDVS
2c5mC           ----------------------------------------------------------------------
2v4uA           ---------------IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKETEDPVLCKAD
2vktA           ---------------IALVGKY-KLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKETEDPVLCKAD
2c5mD           ----------------------------------------------------------------------
2c5mB           ----------------------------------------------------------------------
2c5mA           ----------------------------------------------------------------------
2w7tA           ------------TVRIAFVGKYLQAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEALLGCD
2vo1B           ----------------------------------------------------------------------
2vo1A           ----------------------------------------------------------------------
3ihlA           ----------------------------------------------------------------------
3ihlB           ----------------------------------------------------------------------


                         .         .         .         .         *         .         .:420
query           GVLVPGGFGDRGVEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVLGLEGAHSSELNPETPFPVIDL
1vcmA           GILVPGGF--RGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDL
1vcoA           GILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDL
1s1mA           AILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVAL
1s1mB           AILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVAL
1vcnA           GILVPGGV--RGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDL
2c5mC           ----------------------------------------------------------------------
2v4uA           GILVPGGFGIRGTLGKLQAISWARTKKIPFLGV-LGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVID
2vktA           GILVPGGFGIRGTLGKLQAISWARTKKIPFLGVCLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVID
2c5mD           ----------------------------------------------------------------------
2c5mB           ----------------------------------------------------------------------
2c5mA           ----------------------------------------------------------------------
2w7tA           GIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGV-LGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRI
2vo1B           ----------------------------------------------------------------------
2vo1A           ----------------------------------------------------------------------
3ihlA           ----------------------------------------------------------------------
3ihlB           ----------------------------------------------------------------------


                         .         .         +         .         .         .         .:490
query           MPEQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASDLIYERHRHRYEFNNEYRTQLIESGLTIAGTSPDG
1vcmA           MPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGM
1vcoA           MPEQLEV---GGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGM
1s1mA           ITEWRDENGNVETMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDD
1s1mB           ITEWRDENNVEVTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDD
1vcnA           M-----------TMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGA
2c5mC           ----------------------------------------------------------------------
2v4uA           MPEHNP-GNLGGTMRLGIRRTVFKENSILRKLYGDPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDG
2vktA           MPEH--------TMRLGIRRTVFKENSILRKLYGDPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDG
2c5mD           ----------------------------------------------------------------------
2c5mB           ----------------------------------------------------------------------
2c5mA           ----------------------------------------------------------------------
2w7tA           M--DCDRNKMGANMHLGACDVYIEKSSIMAKIYSSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPT
2vo1B           ----------------------------------------------------------------------
2vo1A           ----------------------------------------------------------------------
3ihlA           ----------------------------------------------------------------------
3ihlB           ----------------------------------------------------------------------


                         *         .         .         .         .         +         .:560
query           RLVECVEVKDHPWFVAVQYHPELKSRPNRPHPLFVGFVGAALxxx
1vcmA           RLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAAL---
1vcoA           RLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAAL---
1s1mA           QLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAA----
1s1mB           QLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAA----
1vcnA           GLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAAL---
2c5mC           ---------------------------------------------
2v4uA           DRMEIIELANHPYFVGVQFHPEFSSRPMKPSP-------------
2vktA           DRMEIIELANHPYFVGVQFHPEFSSRPMKPSP-------------
2c5mD           ---------------------------------------------
2c5mB           ---------------------------------------------
2c5mA           ---------------------------------------------
2w7tA           FSSRCVEAVENPFFLAVQFHPEFISTPMDPAPTYLSFMAAA----
2vo1B           ---------------------------------------------
2vo1A           ---------------------------------------------
3ihlA           ---------------------------------------------
3ihlB           ---------------------------------------------