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Result of BLT:PDB for dred0:ABO50796.1

[Show Plain Result]

#ERROR : Can't open dsspfile "1or7A.bssp"
#ERROR : Can't open dsspfile "1or7B.bssp"
#ERROR : Can't open dsspfile "2h27D.bssp"
#ERROR : Can't open dsspfile "2h27A.bssp"
#ERROR : Can't open dsspfile "1h3lB.bssp"
#ERROR : Can't open dsspfile "1h3lA.bssp"
#ERROR : Can't open dsspfile "2q1zA.bssp"
#ERROR : Can't open dsspfile "2o8xA.bssp"
#ERROR : Can't open dsspfile "2o7gB.bssp"
#ERROR : Can't open dsspfile "2o7gA.bssp"
#ERROR : Can't open dsspfile "2q1zC.bssp"

## Summary of PDB Search
:200
    4e-33  42%  1or7A  [a.177.1 - a.4.13] RNA POLYMERASE SIGMA-E FACTOR
    3e-29  44%  1or7B  [a.177.1 - a.4.13] RNA POLYMERASE SIGMA-E FACTOR
    1e-10  42%  2h27D  [x.x.x] RNA POLYMERASE SIGMA E FACTOR
    1e-10  42%  2h27A  [x.x.x] RNA POLYMERASE SIGMA E FACTOR
    4e-09  38%  1h3lB  [a.177.1] RNA POLYMERASE SIGMA FACTOR
    4e-09  38%  1h3lA  [a.177.1] RNA POLYMERASE SIGMA FACTOR
    8e-08  26%  2q1zA  [x.x.x] RPOE, ECF SIGE
    3e-07  41%  2o8xA  [x.x.x] PROBABLE RNA POLYMERASE SIGMA-C FACTOR
    3e-06  32%  2o7gB  [x.x.x] PROBABLE RNA POLYMERASE SIGMA-C FACTOR
    3e-06  32%  2o7gA  [x.x.x] PROBABLE RNA POLYMERASE SIGMA-C FACTOR
    3e-05  29%  2q1zC  [x.x.x] RPOE, ECF SIGE
:200

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxLEDQLLVERSKKGDREAFEHLVRLYENKVYTIAYRLMGNHADASDLAQDAFIKIYQALPNFRGDSSFS
1or7A           --LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFY
1or7B           --LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPS-GDVPDVVQEAFIKAYRALDSFRGDSAFY
2h27D           ----------------------------------------------------------------------
2h27A           ----------------------------------------------------------------------
1h3lB           ---------ERSARFERDALEFL-----DQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNLK
1h3lA           ---------ERSARFERDALEFL-----DQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNLK
2q1zA           ---------------DEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSASVA
2o8xA           ----------------------------------------------------------------------
2o7gB           -------------KGNGRALEAFIKATQQDVWRVAY--LSDVGSADDLTQETFLRAIGAIPRFSARSSAR
2o7gA           -------------KGNGRALEAFIKATQQDVWRVAY--LSDVGSADDLTQETFLRAIGAIPRFSARSSAR
2q1zC           ---------------DEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSASVA


                         .         .         *         .         .         .         .:140
query           TWIYHITVNVCRDELRKRQRRPTVSLXXXXXXXXXXXTYEIRSNDPGPEEMLDRSETQAMIQACLNTLSD
1or7A           TWLYRIAVNTAKNYLVAQGRRPPSS---------DVDAIEAENFESGGANLMLSEELRQIVFRTIESLPE
1or7B           TWLYRIAVNTAKNYLVAQGRNLMLS-----------------------------EELRQIVFRTIESLPE
2h27D           -------------------------------------------------------ELRQIVFRTIESLPE
2h27A           -------------------------------------------------------ELRQIVFRTIESLPE
1h3lB           AWLYRILTN-------------------------------------------------------------
1h3lA           AWLYRILTN-------------------------------------------------------------
2q1zA           TWIFTIARNRRIDGLRKDRQPEPEDLFWGP------------DSEPDQADVYEMQQENARLGRAIARLPE
2o8xA           -------------------------------------------------------------------LTT
2o7gB           TWLLAIARHVVADHIR------------------------------------------------------
2o7gA           TWLLAIARHVVADHIR------------------------------------------------------
2q1zC           TWIFTIARNRRIDGLRKDRQPEPEDLFW------------------GPDSEPDQADVYEMQQENAR-LGR


                         +         .         .         .         .         *         .:210
query           DYREIIVMREIQELAYEEIAEILGCSLGTVKSRLSRARQALKEKIxxxxxxxxxxxxxxx
1or7A           DLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV---------------
1or7B           DLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV---------------
2h27D           DLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV---------------
2h27A           DLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV---------------
1h3lB           ------------------------------------------------------------
1h3lA           ------------------------------------------------------------
2q1zA           AQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRLRQ-----------------
2o8xA           DQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDAL-------------------
2o7gB           ------------------------------------------------------------
2o7gA           ------------------------------------------------------------
2q1zC           AIAALIERAFFGDLTHRELAAETGLPLGTIKSRIRLA-----------------------