[GTOP][HELP][ORGANISMS][SEARCH][SUMMARY][COMMENT/QUESTION(gtop-admin@spock.genes.nig.ac.jp)]

Result of BLT:PDB for lsal0:trmU

[Show Plain Result]

#ERROR : Can't open dsspfile "2hmaA.bssp"
#ERROR : Can't open dsspfile "2deuA.bssp"
#ERROR : Can't open dsspfile "2detA.bssp"
#ERROR : Can't open dsspfile "2derB.bssp"
#ERROR : Can't open dsspfile "2derA.bssp"

## Summary of PDB Search
:375
    e-122  68%  2hmaA  [x.x.x] PROBABLE TRNA (5-METHYLAMINOMETHYL-2-
    e-107  56%  2deuA  [x.x.x] TRNA-SPECIFIC 2-THIOURIDYLASE MNMA
    e-107  56%  2detA  [x.x.x] TRNA-SPECIFIC 2-THIOURIDYLASE MNMA
    e-102  55%  2derB  [x.x.x] TRNA-SPECIFIC 2-THIOURIDYLASE MNMA
    1e-94  54%  2derA  [x.x.x] TRNA-SPECIFIC 2-THIOURIDYLASE MNMA
:375

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxxxxxxxxxxxxxxxxxxxAYLLKQQGYDVVGVFMKNWDDKNDSGVCTVTEDYQDVAKVASQIGIPY
2hmaA           ----------------------ALLLKEQGYDVIGIF-KNWDDTD----CTATEDYKDVVAVADQIGIPY
2deuA           ----------------------AWLLQQQGYQVEGLFMKNWEEDDGEEYCTXXXXXXXXXXVCDKLGIEL
2detA           ----------------------AWLLQQQGYQVEGLFMKNWEEDDGEEYCTXXXXXXXXXXVCDKLGIEL
2derB           ----------------------AWLLQQQGYQVEGLFMKNWEEDDGEEYCTXXXXXXXXXXVCDKLGIEL
2derA           ----------------------AWLLQQQGYQVEGLFMKNWEEDDGEEYCTXXXXXXXXXXVCDKLGIEL


                         .         .         *         .         .         .         .:140
query           YSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMSIDADYIAMGHYAQLRRDEDGRV
2hmaA           YSVNFEKEYWDRVFEYFLAEYRAGRTPNPDV-CNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTV
2deuA           HTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAELGADYIATGHYVR-RADVDGKS
2detA           HTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAELGADYIATGHYVR-RADVDGKS
2derB           HTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAADLGADYIATGHYVR-RADVDGKS
2derA           HTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAADLGADYIATGHYVR-RADVDGKS


                         +         .         .         .         .         *         .:210
query           HLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHLQKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKF
2hmaA           H-LRGVDNGKDQTYFLSQLSQEQLQKT-FPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNF
2deuA           RLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREF
2detA           RLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREF
2derB           RLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVT------TGICFIGERKFREF
2derA           RLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLV----------------KFREF


                         .         .         .         +         .         .         .:280
query           LGEFLPAQPGEMVTLDGEVKGNHFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNE
2hmaA           LSNYLPAQPGR--TVDGR-DGEHAGLY-YTIXXXXXXXXXXD---NAPWFVVGKDLSKNILYVGQGFYHD
2deuA           LGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKETEEPWYVVDKDVENNILVVAQGHEHP
2detA           LGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKETEEPWYVVDKDVENNILVVAQGHEHP
2derB           LGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKETEEPWYVVDKDVENNILVVAQGHEHP
2derA           LGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKETEEPWYVVDKDVENNILVVAQGHEHP


                         .         *         .         .         .         .         +:350
query           HLYANSLDASKLSFVDDISDCGDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVVF
2hmaA           SL-STSLEASQVHFTREPEEF--TLECTAKFRYRQPDSKVTVHVKGEKT--EVIFAEPQRAITPGQAVVF
2deuA           RLMSVGLIAQQLHWVDREPFTG-TMRCTVKTRYRQTDIPCTVKALDD-DRIEVIFDEPVAAVTPGQSAVF
2detA           RLMSVGLIAQQLHWVDREPFTG-TMRCTVKTRYRQTDIPCTVKALDD-DRIEVIFDEPVAAVTPGQSAVF
2derB           RLMSVGLIAQQLHWVDREPFTG-TMRCTVKTRYRQTDIPCTVKALDD-DRIEVIFDEPVAAVTPGQSAVF
2derA           RLMSVGLIAQQLHWVDREPFTG-TMRCTVKTRYRQTDIPCTVKALDD-DRIEVIFDEPVAAVTPGQSAVF


                         .         .         .         .         *         .         .:420
query           YDGEECLGSGTIDHAYKESKLLQYV
2hmaA           YDGEECLGGGLIDNAYRDGQVCQYI
2deuA           YNGEVCLGGGIIE------------
2detA           YNGEVCLGGGIIE------------
2derB           YNGEVCLGGGIIE------------
2derA           YNGEVCLGGGIIE------------