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Result of RPS:PDB for pubi0:AAZ21331.1

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#ERROR : Can't open dsspfile "1cy6A.bssp"
#ERROR : Can't open dsspfile "1cy7A.bssp"
#ERROR : Can't open dsspfile "1cy4A.bssp"
#ERROR : Can't open dsspfile "1cy1A.bssp"
#ERROR : Can't open dsspfile "1bpbA.bssp"
#ERROR : Can't open dsspfile "1eclA.bssp"
#ERROR : Can't open dsspfile "1cy2A.bssp"
#ERROR : Can't open dsspfile "1cy8A.bssp"
#ERROR : Can't open dsspfile "1cy0A.bssp"
#ERROR : Can't open dsspfile "1d6mA.bssp"

## Summary of PDB Search
:203
    5e-17  11%  1cy6A  [e.10.1] DNA TOPOISOMERASE I
    6e-17  11%  1cy7A  [e.10.1] DNA TOPOISOMERASE I
    1e-16  11%  1cy4A  [e.10.1] DNA TOPOISOMERASE I
    5e-16   9%  1cy1A  [e.10.1] DNA TOPOISOMERASE I
    1e-12  14%  1bpbA  [x.x.x] DNA POLYMERASE BETA
    5e-12  16%  1eclA  [x.x.x] ESCHERICHIA COLI TOPOISOMERASE I
    8e-12  16%  1cy2A  [e.10.1] DNA TOPOISOMERASE I
    3e-11  16%  1cy8A  [e.10.1] DNA TOPOISOMERASE I
    1e-08  20%  1cy0A  [e.10.1] DNA TOPOISOMERASE I
    5e-08  15%  1d6mA  [e.10.1] DNA TOPOISOMERASE III
:203

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxxxxxxxxxxxxxxPGLGPKSAKRIVLKLINNRDELVKPMANTLAQVYKNVIRCQSCGTLKSNSLGC
1cy6A           -----------------------------------------------------------VIVES-PAKAK
1cy7A           -----------------------------------------------------------VIVES-PAKAK
1cy4A           -----------------------------------------------------------VIVES-PAKAK
1cy1A           ---------------------------------------------------------------------A
1bpbA           -----------------TGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEML
1eclA           ----------------------------------------------------------------------
1cy2A           ----------------------------------------------------------------------
1cy8A           ----------------------------------------------------------------------
1cy0A           ----------------------------------------------------------------------
1d6mA           --------------------------------------------------------------------PH


                         .         .         *         .         .         .         .:140
query           NNCENSKEKYNKICVVEDIADQWSIENSNIYKGYFHILGGTISSAGQRKEDLLINSLVERVSRENIEEVI
1cy6A           TINKYLGSDYVVKSSVGHIRDLPTDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIY
1cy7A           TINKYLGSDYVVKSSVGHIRDLPTDERGALVNRMGVDPWHNWEAHYEVLPGKEVVSELKQLAEK-ADHIY
1cy4A           TINKYLGSDYVVKSSVGHIRDLPTDERGALVNRMGVDPWHNWEHYEVLPGKEKVVSELKQLAE-KADHIY
1cy1A           KAKTINKYLGSDYVVKSSVGHIRDLPRGALVNRMGVDPWHNWEHYEVLPGKEKVVSELKQLAEK-ADHIY
1bpbA           QMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNTSESSKQPKLLHRVVEQLQKVRFITDT
1eclA           -----------ALVIVESPAKAKTINKGSDYRGALVNRMGVDPWHNWEAHYEVLPGKEKVVSEEKADHIY
1cy2A           -----------ALVIVESPAKAKTINKGSDYRGALVNRMGVDPWHNWEAHYEVLPGKEKVVSEEKADHIY
1cy8A           -----------ALVIVESPAKAKTINKGSDYRGALVNRMGVDPWHNWEAHYEVLPGKEKVVSEEKADHIY
1cy0A           ----------KALVIVESPAKAKTINKGSDYVVKSHIRMGVDPWHNWEAHYEVLPGKEKVVSEEKADHIY
1d6mA           RKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLADLPIVPEKWQLPRPSVTKQLNVHEASEIV


                         +         .         .         .         .         *         .:210
query           LATSATVEGQTTAYYIEDXXXXXXXXXXXXAQGLPVGGEIESLDDGTLYSAFKNRTGIKxxxx
1cy6A           LATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRGELNIDRVNAQQARR-------
1cy7A           LATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQALNIDRVNAQQARR-------
1cy4A           LATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRGELNIDRVNAQQARRFMD----
1cy1A           LATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRGELNIDRVNAQQARRFMD----
1bpbA           L-----SKGETKFMGV-----------------------------------------------
1eclA           LATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQELNIDRVNAQQARRFMD----
1cy2A           LATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQALNIDRVNAQQARRFMD----
1cy8A           LATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRGELNIDRVNAQQARRFMD----
1cy0A           LATDLDREGEAIAWHLRERVVFNEITKNAIRQAFNKPGEL----NIDRVNAQQAR--------
1d6mA           HAGDPDREGQLLVDEV-----------------------------------------------