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Result of BLT:PDB for rmet0:ABF07796.1

[Show Plain Result]

#ERROR : Can't open dsspfile "1or7A.bssp"
#ERROR : Can't open dsspfile "2o8xA.bssp"
#ERROR : Can't open dsspfile "1or7B.bssp"
#ERROR : Can't open dsspfile "2h27D.bssp"
#ERROR : Can't open dsspfile "2h27A.bssp"

## Summary of PDB Search
:188
    2e-05  27%  1or7A  [a.177.1 - a.4.13] RNA POLYMERASE SIGMA-E FACTOR
    2e-04  38%  2o8xA  [x.x.x] PROBABLE RNA POLYMERASE SIGMA-C FACTOR
    9e-04  29%  1or7B  [a.177.1 - a.4.13] RNA POLYMERASE SIGMA-E FACTOR
    9e-04  29%  2h27D  [x.x.x] RNA POLYMERASE SIGMA E FACTOR
    9e-04  29%  2h27A  [x.x.x] RNA POLYMERASE SIGMA E FACTOR
:188

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxTDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQRILQNTIHDW
1or7A           --TDQVLVERVQKGDQKAFNLLVVRYQHKVASLDVVQEAFIK-AYRALDSFRGD----------SAFYTW
2o8xA           ----------------------------------------------------------------------
1or7B           ----------------------------------------------------------------------
2h27D           ----------------------------------------------------------------------
2h27A           ----------------------------------------------------------------------


                         .         .         *         .         .         .         .:140
query           FRRQKVRNTWVTLFSNLRDEREGDDSDLLDTLEAQAGTEMAESSADKVERAQVMHIIEQEIQRLPTRQRE
1or7A           LYRIAVNTAKNYLVAQGRRPPSSD----VDAIEAE---NFESGGANLMLSEELRQIVFRTIESLPEDLRM
2o8xA           ------------------------------------------------------------IADLTTDQRE
1or7B           ---------------------------------------------------ELRQIVFRTIESLPEDLRM
2h27D           ---------------------------------------------------ELRQIVFRTIESLPEDLRM
2h27A           ---------------------------------------------------ELRQIVFRTIESLPEDLRM


                         +         .         .         .         .         *         .:210
query           AFLMRYWEDMDVAETAAVMGCSEGSVKTHCSRATHTLxxxxxxxxxxx
1or7A           AITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI-----------
2o8xA           ALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDAL-----------
1or7B           AITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI-----------
2h27D           AITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI-----------
2h27A           AITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI-----------