[GTOP][HELP][ORGANISMS][SEARCH][SUMMARY][COMMENT/QUESTION(gtop-admin@spock.genes.nig.ac.jp)]

Result of BLT:PDB for rpal2:ABE38484.1

[Show Plain Result]

#ERROR : Can't open dsspfile "2uuuC.bssp"
#ERROR : Can't open dsspfile "2uuuB.bssp"
#ERROR : Can't open dsspfile "2uuvD.bssp"
#ERROR : Can't open dsspfile "2uuvB.bssp"
#ERROR : Can't open dsspfile "2uuvA.bssp"
#ERROR : Can't open dsspfile "2uuuD.bssp"
#ERROR : Can't open dsspfile "2uuuA.bssp"
#ERROR : Can't open dsspfile "2uuvC.bssp"
#ERROR : Can't open dsspfile "1w1mA.bssp"
#ERROR : Can't open dsspfile "1w1lA.bssp"
#ERROR : Can't open dsspfile "1w1jA.bssp"
#ERROR : Can't open dsspfile "1vaoA.bssp"
#ERROR : Can't open dsspfile "1f0xA.bssp"
#ERROR : Can't open dsspfile "1ahuA.bssp"
#ERROR : Can't open dsspfile "1w1kA.bssp"
#ERROR : Can't open dsspfile "2exrA.bssp"
#ERROR : Can't open dsspfile "1wveA.bssp"
#ERROR : Can't open dsspfile "2qpmA.bssp"
#ERROR : Can't open dsspfile "3dq0A.bssp"
#ERROR : Can't open dsspfile "3c0pA.bssp"
#ERROR : Can't open dsspfile "3bw7A.bssp"
#ERROR : Can't open dsspfile "1w1oA.bssp"

## Summary of PDB Search
:489
    2e-15  28%  2uuuC  [x.x.x] ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
    2e-15  28%  2uuuB  [x.x.x] ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
    4e-15  29%  2uuvD  [x.x.x] ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
    4e-15  29%  2uuvB  [x.x.x] ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
    4e-15  29%  2uuvA  [x.x.x] ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
    4e-15  29%  2uuuD  [x.x.x] ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
    4e-15  29%  2uuuA  [x.x.x] ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
    3e-14  29%  2uuvC  [x.x.x] ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
    1e-06  27%  1w1mA  [d.145.1 - d.58.32] VANILLYL-ALCOHOL OXIDASE
    1e-06  27%  1w1lA  [d.145.1 - d.58.32] VANILLYL-ALCOHOL OXIDASE
    1e-06  27%  1w1jA  [d.145.1 - d.58.32] VANILLYL-ALCOHOL OXIDASE
    1e-06  27%  1vaoA  [d.145.1 - d.58.32] VANILLYL-ALCOHOL OXIDASE
    1e-06  36%  1f0xA  [d.145.1 - d.58.32] D-LACTATE DEHYDROGENASE
    1e-06  27%  1ahuA  [d.145.1 - d.58.32] VANILLYL-ALCOHOL OXIDASE
    2e-06  28%  1w1kA  [d.145.1 - d.58.32] VANILLYL-ALCOHOL OXIDASE
    8e-06  28%  2exrA  [x.x.x] CYTOKININ DEHYDROGENASE 7
    1e-05  22%  1wveA  [d.145.1 - d.58.32 (1diiA)] 4-CRESOL DEHYDROGENASE
    2e-05  26%  2qpmA  [x.x.x] CYTOKININ DEHYDROGENASE 1
    2e-05  26%  3dq0A  [x.x.x] CYTOKININ DEHYDROGENASE 1
    2e-05  26%  3c0pA  [x.x.x] CYTOKININ DEHYDROGENASE 1
    2e-05  26%  3bw7A  [x.x.x] CYTOKININ DEHYDROGENASE 1
    7e-05  26%  1w1oA  [d.145.1 - d.58.32] CYTOKININ DEHYDROGENASE 1
:489

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIARFAALVGDKYAVTDPAELEAYVTEERNLYRGHSPLVLR
2uuuC           ------------------------------------------------------------------LIVL
2uuuB           ------------------------------------------------------------------LIVL
2uuvD           ------------------------------------------------------------------LIVL
2uuvB           ------------------------------------------------------------------LIVL
2uuvA           ------------------------------------------------------------------LIVL
2uuuD           ------------------------------------------------------------------LIVL
2uuuA           ------------------------------------------------------------------LIVL
2uuvC           ------------------------------------------------------------------LIVL
1w1mA           -------------------------------------------------------------------IVA
1w1lA           -------------------------------------------------------------------IVA
1w1jA           -------------------------------------------------------------------IVA
1vaoA           -------------------------------------------------------------------IVA
1f0xA           ----------------------------------ARLVGSSHLLTDPAKTARYRKGFRS-GQGDALAVVF
1ahuA           -------------------------------------------------------------------IVA
1w1kA           -------------------------------------------------------------------IVA
2exrA           -------------------------------------------------------------------VVR
1wveA           ------------------------------VQKFRALLGDDNVLVESDQLVPYIMMPVENXXXXXXXXXX
2qpmA           -------------------------------------------------------------------VLY
3dq0A           -------------------------------------------------------------------VLY
3c0pA           -------------------------------------------------------------------VLY
3bw7A           -------------------------------------------------------------------VLY
1w1oA           -------------------------------------------------------------------VLY


                         .         .         *         .         .         .         .:140
query           PGSTAEIAAICKLASETRVALVPQGGNTGLVGGQTPLNGEIVISLKRMDNIREVDTSSNTMTVEAGVILQ
2uuuC           PHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNEVSIDMRRMNKVLWVDRREMTACIQVGIMGP
2uuuB           PHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNEVSIDMRRMNKVLWVDRREMTACIQVGIMGP
2uuvD           PHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNEVSIDMRRMNKVLWVDRREMTACIQVGIMGP
2uuvB           PHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNEVSIDMRRMNKVLWVDRREMTACIQVGIMGP
2uuvA           PHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNEVSIDMRRMNKVLWVDRREMTACIQVGIMGP
2uuuD           PHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNEVSIDMRRMNKVLWVDRREMTACIQVGIMGP
2uuuA           PHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNEVSIDMRRMNKVLWVDRREMTACIQVGIMGP
2uuvC           PHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVERFTVIDMRRMNKVLWVDRREMTACIQVGIMGP
1w1mA           PRNVADVQSIVGLANKFSFPLWPIGRNSGYGGAAPRVSGSVVLDMKNMNRVLEVNVEGAYCVVEPGVTLH
1w1lA           PRNVADVQSIVGLANKFSFPLWPIGRNSGYGGAAPRVSGSVVLDMKNMNRVLEVNVEGAYCVVEPGVTLH
1w1jA           PRNVADVQSIVGLANKFSFPLWPIGRNSGYGGAAPRVSGSVVLDMKNMNRVLEVNVEGAYCVVEPGVTLH
1vaoA           PRNVADVQSIVGLANKFSFPLWPIGRNSGYGGAAPRVSGSVVLDMKNMNRVLEVNVEGAYCVVEPGVTLH
1f0xA           PGSLLELWRVLKACVTADKIILMQAANTGLTEGSTP-NGNVIISTLRLDKL-------------------
1ahuA           PRNVADVQSIVGLANKFSFPLWPIGRNSGYGGAAPRVSGSVVLDMKNMNRVLEVNVEGAYCVVEPGVTLH
1w1kA           PRNVADVQSIVGLANKFSFPLWPIGRNSGYGGAAPRVSGSVVLDMKNMNRVLEVNVEGAYCVVEPGVTLH
2exrA           PVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQA-AEGGLVVDSTTAENHFEVGYLSGFVDVSGGALWE
1wveA           XXXVEQVQGVVKICNEHKIPIISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFG
2qpmA           PSSTADLVALLSAANSTPYTIAFRGRGHSLMG-QAFAPGGVVVNMASLGDAARINVSADGRYVDAGGEQV
3dq0A           PSSTADLVALLSAANSTPYTIAFRGRGHSLMG-QAFAPGGVVVNMASLGDAARINVSADGRYVDAGGEQV
3c0pA           PSSTADLVALLSAANSTPYTIAFRGRGHSLMG-QAFAPGGVVVNMASLGDAARINVSADGRYVDAGGEQV
3bw7A           PSSTADLVALLSAANSTPYTIAFRGRGHSLMG-QAFAPGGVVVNMASLGDAARINVSADGRYVDAGGEQV
1w1oA           PSSTGDLVALLSAANSTPYTIAFRGRGHSLMG-QAFAPGGVVVNMASLGDAARINVSADGRYVDAGGEQV


                         +         .         .         .         .         *         .:210
query           HAQERAASVDRLFPLSLGAQGSCTIGGNLSTNXXXXXXXXXXXXRDMALGLEVVLADGRILNLLSKLKKD
2uuuC           ELEKQLHKQG----VSLGHDPDSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLE------LRN
2uuuB           ELEKQLHKQG----VSLGHDPDSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLE------LRN
2uuvD           ELEKQLHKQG----VSLGHDPDSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTL---------E
2uuvB           ELEKQLHKQG----VSLGHDPDSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTL--------EL
2uuvA           ELEKQLHKQG----VSLGHDPDSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTL---------E
2uuuD           ELEKQLHKQG----VSLGHDPDSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTL--------EL
2uuuA           ELEKQLHKQG----VSLGHDPDSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTL---------E
2uuvC           ELEKQLHKQG----VSLGHDPDSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTL--------EL
1w1mA           NYLEANNLRDKLW-LDVPDLGGGSVLGNAVERGVGYTPYGDHWM--MHSGMEVVLANGELLETMGLKPED
1w1lA           NYLEANNLRDKLW-LDVPDLGGGSVLGNAVERGVGYTPYGDHWM--MHSGMEVVLANGELLETMGLKPED
1w1jA           NYLEANNLRDKLW-LDVPDLGGGSVLGNAVERGVGYTPYGDHWM--MHSGMEVVLANGELLETMGLKPED
1vaoA           NYLEANNLRDKLW-LDVPDLGGGSVLGNAVERGVGYTPYGDHWM--MHSGMEVVLANGELLETMGLKPED
1f0xA           ----------------------------------------------------------------------
1ahuA           NYLEANNLRDKLW-LDVPDLGGGSVLGNAVERGVGYTPYGDHWM--MHSGMEVVLANGELLETMGLKPED
1w1kA           NYLEANNLRDKLW-LDVPDLGGGSVLGNAVERGVGYTPYGDHWM--MHSGMEVVLANGELLRLPDPKRPE
2exrA           DVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVT-CSEIENS
1wveA           QMYDYIQ--ENNLPVMLSFSAPSAIAGPVNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTMGGVPGS
2qpmA           WIDVLRASLARVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNAD
3dq0A           WIDVLRASLARVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNAD
3c0pA           WIDVLRASLARVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNAD
3bw7A           WIDVLRASLARVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNAD
1w1oA           WIDVLRASLARVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNAD


                         .         .         .         +         .         .         .:280
query           NTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPADALKLLGIAQAEAAGNLTSFELIAE
2uuuC           GAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVE--YYGFLFPTFAHAVSALQQIRSS-----------
2uuuB           GAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVE--YYGFLFPTFAHAVSALQQIRSS-----------
2uuvD           LRGINYKHIILGSEGTLGIITEAVMKVHAVPQAVE--YYGFLFPTFAHAVSALQQIRSS-----------
2uuvB           RAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVE--YYGFLFPTFAHAVSALQQIRSS-----------
2uuvA           LRGINYKHIILGSEGTLGIITEAVMKVHAVPQAVE--YYGFLFPTFAHAVSALQQIRSS-----------
2uuuD           RAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVE--YYGFLFPTFAHAVSALQQIRSS-----------
2uuuA           LRGINYKHIILGSEGTLGIITEAVMKVHAVPQAVE--YYGFLFPTFAHAVSALQQIRSS-----------
2uuvC           RAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVE--YYGFLFPTFAHAVSALQQIRSS-----------
1w1mA           QPWSKIAHLFLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGALQNVPTIRH
1w1lA           QPWSKIAHLFLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGALQNVPTIRH
1w1jA           QPWSKIAHLFLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGALQNVPTIRH
1vaoA           QPWSKIAHLFLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGALQNVPTIRH
1f0xA           ----------------------------------------------------------------------
1ahuA           QPWSKIAHLFLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGALQNVPTIRH
1w1kA           TMGLKPEDLFLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGALQNVPTIRH
2exrA           ELFFSV----LGGLGQFGIITRARVLLQPAPRVVYTEF--------------------------------
1wveA           NTGPTLDGMF--TQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV-------------------
2qpmA           -----LFDAVLGGLGQFGVITRARIAVEPAPRLVYTDFAAFSADQERL----------------------
3dq0A           -----LFDAVLGGLGQFGVITRARIAVEPAPRLVYTDFAAFSADQERL----------------------
3c0pA           -----LFDAVLGGLGQFGVITRARIAVEPAPRLVYTDFAAFSADQERL----------------------
3bw7A           -----LFDAVLGGLGQFGVITRARIAVEPAPRLVYTDFAAFSADQERL----------------------
1w1oA           -----LFDAVLGGLGQFGVITRARIAVEPAPRFVYTDFAAFSADQERL----------------------


                         .         *         .         .         .         .         +:350
query           IALDFSVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
2uuuC           ----------------------------------------------------------------------
2uuuB           ----------------------------------------------------------------------
2uuvD           ----------------------------------------------------------------------
2uuvB           ----------------------------------------------------------------------
2uuvA           ----------------------------------------------------------------------
2uuuD           ----------------------------------------------------------------------
2uuuA           ----------------------------------------------------------------------
2uuvC           ----------------------------------------------------------------------
1w1mA           ILLDAAV---------------------------------------------------------------
1w1lA           ILLDAAV---------------------------------------------------------------
1w1jA           ILLDAAV---------------------------------------------------------------
1vaoA           ILLDAAV---------------------------------------------------------------
1f0xA           ----------------------------------------------------------------------
1ahuA           ILLDAAV---------------------------------------------------------------
1w1kA           ILLDAAV---------------------------------------------------------------
2exrA           ----------------------------------------------------------------------
1wveA           ----------------------------------------------------------------------
2qpmA           ----------------------------------------------------------------------
3dq0A           ----------------------------------------------------------------------
3c0pA           ----------------------------------------------------------------------
3bw7A           ----------------------------------------------------------------------
1w1oA           ----------------------------------------------------------------------


                         .         .         .         .         *         .         .:420
query           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
2uuuC           ----------------------------------------------------------------------
2uuuB           ----------------------------------------------------------------------
2uuvD           ----------------------------------------------------------------------
2uuvB           ----------------------------------------------------------------------
2uuvA           ----------------------------------------------------------------------
2uuuD           ----------------------------------------------------------------------
2uuuA           ----------------------------------------------------------------------
2uuvC           ----------------------------------------------------------------------
1w1mA           ----------------------------------------------------------------------
1w1lA           ----------------------------------------------------------------------
1w1jA           ----------------------------------------------------------------------
1vaoA           ----------------------------------------------------------------------
1f0xA           ----------------------------------------------------------------------
1ahuA           ----------------------------------------------------------------------
1w1kA           ----------------------------------------------------------------------
2exrA           ----------------------------------------------------------------------
1wveA           ----------------------------------------------------------------------
2qpmA           ----------------------------------------------------------------------
3dq0A           ----------------------------------------------------------------------
3c0pA           ----------------------------------------------------------------------
3bw7A           ----------------------------------------------------------------------
1w1oA           ----------------------------------------------------------------------


                         .         .         +         .         .         .         .:490
query           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
2uuuC           ---------------------------------------------------------------------
2uuuB           ---------------------------------------------------------------------
2uuvD           ---------------------------------------------------------------------
2uuvB           ---------------------------------------------------------------------
2uuvA           ---------------------------------------------------------------------
2uuuD           ---------------------------------------------------------------------
2uuuA           ---------------------------------------------------------------------
2uuvC           ---------------------------------------------------------------------
1w1mA           ---------------------------------------------------------------------
1w1lA           ---------------------------------------------------------------------
1w1jA           ---------------------------------------------------------------------
1vaoA           ---------------------------------------------------------------------
1f0xA           ---------------------------------------------------------------------
1ahuA           ---------------------------------------------------------------------
1w1kA           ---------------------------------------------------------------------
2exrA           ---------------------------------------------------------------------
1wveA           ---------------------------------------------------------------------
2qpmA           ---------------------------------------------------------------------
3dq0A           ---------------------------------------------------------------------
3c0pA           ---------------------------------------------------------------------
3bw7A           ---------------------------------------------------------------------
1w1oA           ---------------------------------------------------------------------