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Result of BLT:PDB for rpal2:ABE39592.1

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#ERROR : Can't open dsspfile "1ysqA.bssp"
#ERROR : Can't open dsspfile "2g7uC.bssp"
#ERROR : Can't open dsspfile "2g7uB.bssp"
#ERROR : Can't open dsspfile "2g7uA.bssp"
#ERROR : Can't open dsspfile "1mkmB.bssp"
#ERROR : Can't open dsspfile "1mkmA.bssp"
#ERROR : Can't open dsspfile "1yspA.bssp"
#ERROR : Can't open dsspfile "1tf1D.bssp"
#ERROR : Can't open dsspfile "1tf1C.bssp"
#ERROR : Can't open dsspfile "1tf1B.bssp"
#ERROR : Can't open dsspfile "1tf1A.bssp"
#ERROR : Can't open dsspfile "2o0yD.bssp"
#ERROR : Can't open dsspfile "2o0yC.bssp"
#ERROR : Can't open dsspfile "2o0yB.bssp"
#ERROR : Can't open dsspfile "2o0yA.bssp"
#ERROR : Can't open dsspfile "3bjnA.bssp"
#ERROR : Can't open dsspfile "2o9aD.bssp"
#ERROR : Can't open dsspfile "2o9aB.bssp"
#ERROR : Can't open dsspfile "2o9aA.bssp"

## Summary of PDB Search
:263
    7e-10  33%  1ysqA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR YIAJ
    7e-10  32%  2g7uC  [x.x.x] TRANSCRIPTIONAL REGULATOR
    7e-10  32%  2g7uB  [x.x.x] TRANSCRIPTIONAL REGULATOR
    7e-10  32%  2g7uA  [x.x.x] TRANSCRIPTIONAL REGULATOR
    6e-09  21%  1mkmB  [a.4.5 - d.110.2] ICLR TRANSCRIPTIONAL REGULATOR
    6e-09  21%  1mkmA  [a.4.5 - d.110.2] ICLR TRANSCRIPTIONAL REGULATOR
    6e-06  27%  1yspA  [x.x.x] TRANSCRIPTIONAL REGULATOR KDGR
    6e-06  28%  1tf1D  [d.110.2] NEGATIVE REGULATOR OF ALLANTOIN AND GLYOXYLATE
    6e-06  28%  1tf1C  [d.110.2] NEGATIVE REGULATOR OF ALLANTOIN AND GLYOXYLATE
    6e-06  28%  1tf1B  [d.110.2] NEGATIVE REGULATOR OF ALLANTOIN AND GLYOXYLATE
    6e-06  28%  1tf1A  [d.110.2] NEGATIVE REGULATOR OF ALLANTOIN AND GLYOXYLATE
    1e-05  26%  2o0yD  [x.x.x] TRANSCRIPTIONAL REGULATOR
    1e-05  26%  2o0yC  [x.x.x] TRANSCRIPTIONAL REGULATOR
    2e-05  27%  2o0yB  [x.x.x] TRANSCRIPTIONAL REGULATOR
    2e-05  27%  2o0yA  [x.x.x] TRANSCRIPTIONAL REGULATOR
    2e-05  43%  3bjnA  [x.x.x] TRANSCRIPTIONAL REGULATOR, PUTATIVE
    1e-04  24%  2o9aD  [x.x.x] ACETATE OPERON REPRESSOR
    1e-04  24%  2o9aB  [x.x.x] ACETATE OPERON REPRESSOR
    1e-04  24%  2o9aA  [x.x.x] ACETATE OPERON REPRESSOR
:263

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxEASPGPLARYIDVLEVIAAFSGAITLADVSSILDLPKTTAHRLLKGLVRAGLAVEGDAGRSYYVGE
1ysqA           ----------------------------------------------------------------------
2g7uC           ----------------------------TLAELATEAGLSRPAVRRILLTLQKLGY-VAGSGGR----WS
2g7uB           ----------------------------TLAELATEAGLSRPAVRRILLTLQKLGY-VAGSGGR----WS
2g7uA           ----------------------------TLAELATEAGLSRPAVRRILLTLQKLGY-VAGSGGR----WS
1mkmB           ----------LKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKR-YVPGY
1mkmA           ----------LKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKR-YVPGY
1yspA           ----------------------------------------------------------------------
1tf1D           ----------------------------------------------------------------------
1tf1C           ----------------------------------------------------------------------
1tf1B           ----------------------------------------------------------------------
1tf1A           ----------------------------------------------------------------------
2o0yD           ----DAGVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATCARSVLTSRADG--SYSLGP
2o0yC           ----DAGVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATCARSVLTSRADG--SYSLGP
2o0yB           ----------VTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATCARSVLTSRADG--SYSLGP
2o0yA           ----------VTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATCARSVLTSRADG--SYSLGP
3bjnA           ----------------------------------------------------------------------
2o9aD           ----------------------------------------------------------------------
2o9aB           ----------------------------------------------------------------------
2o9aA           ----------------------------------------------------------------------


                         .         .         *         .         .         .         .:140
query           RLTRLLHAGADDGWYASLAGPHLRALTEASTETCYLARLIGSRVVVALSYSPDVRWRGYVQPGIEMPVNA
1ysqA           -----------------IAAPHLEALNIATGETINFSSREDDHAILIYKLEPTLRTRAYI--GQHMPLYC
2g7uC           LTPRVLSIGQHYSESHALAAPRLLEVAEKTQESASLGVLDGADVVYAARV-PVRRISINVSVGTRVPAYA
2g7uB           LTPRVLSIGQHYSESHALAAPRLLEVAEKTQESASLGVLDGADVVYAARV-PVRRISINVSVGTRVPAYA
2g7uA           LTPRVLSIGQHYSESHALAAPRLLEVAEKTQESASLGVLDGADVVYAARV-PVRRISINVSVGTRVPAYA
1mkmB           KLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEGEQSIPMVSRLGMKVDLYS
1mkmA           KLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLILKDGFEGVYIDKVEGEQSIPMVSRLGMKVDLYS
1yspA           ----------------------MRELSRLTKETIHLGALDEDSIVYIHKIDSMI--------GRRNPLYS
1tf1D           ----------------SVAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHA
1tf1C           ----------------SVAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHA
1tf1B           ----------------SVAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHA
1tf1A           ----------------SVAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHA
2o0yD           ELRWVRLAGRT--WAPPEEVVDIRQLSADTGETVNLYIRQGSRVVVAQCES-TATVRSVIPLGVPYPXXX
2o0yC           ELRWVRLAGRT--WAPPEEVVDIRQLSADTGETVNLYIRQGSRVVVAQCES-TATVRSVIPLGVPYPXXX
2o0yB           ELRWVRLAGRT--WAPPEEVVDIRQLSADTGETVNLYIRQGSRVVVAQCES-TATVRSVIPLGVPYPXXX
2o0yA           ELRWVRLAGRT--WAPPEEVVDIRQLSADTGETVNLYIRQGSRVVVAQCES-TATVRSVIPLGVPYPXXX
3bjnA           ----------------------------------------------------------------------
2o9aD           ----------------AIVHPILRNLMEESGETVNMAVLDQSEAIIIDQVQCTHLMRMSAPIGGKLPMHA
2o9aB           ----------------AIVHPILRNLMEESGETVNMAVLDQSEAIIIDQVQCTHLMRMSAPIGGKLPMHA
2o9aA           ----------------AIVHPILRNLMEESGETVNMAVLDQSEAIIIDQVQCTHLMRMSAPIGGKLPMHA


                         +         .         .         .         .         *         .:210
query           AATGKAIMAFQSKVLIAEALSHELPKPTINSHTSRKWIEQEFAKVRTNGYATCIGEIDEGLAAIAVPVRL
1ysqA           SAMGKIYMAFGHPDYVKESHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFD
2g7uC           TS-GRALLAWAPERVVAESTFQKLGPETIGTAAE---LERELAKVREQGFALTSEELEKGLISLAAPVHD
2g7uB           TS-GRALLAWAPERVVAESTFQKLGPETIGTAAE---LERELAKVREQGFALTSEELEKGLISLAAPVHD
2g7uA           TS-GRALLAWAPERVVAESTFQKLGPETIGTAAE---LERELAKVREQGFALTSEELEKGLISLAAPVHD
1mkmB           TASGKSILAFVPEKELKEYLKIELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFD
1mkmA           TASGKSILAFVPEKELKEYLKIELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFD
1yspA           TAIGKVLLAWRDRDEVKQILEGEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFD
1tf1D           SGAGKALLYPLAEIILQTGLQQFTPTTLVDMPTLLKDLEQ----ARELGYTVDKEEHVVGLNCIASAIYD
1tf1C           SGAGKALLYPLAEIILQTGLQQFTPTTLVDMPTLLKDLEQ----ARELGYTVDKEEHVVGLNCIASAIYD
1tf1B           SGAGKALLYPLAEIILQTGLQQFTPTTLVDMPTLLKDLEQ----ARELGYTVDKEEHVVGLNCIASAIYD
1tf1A           SGAGKALLYPLAEIILQTGLQQFTPTTLVDMPTLLKDLEQ----ARELGYTVDKEEHVVGLNCIASAIYD
2o0yD           XXXXXXXXXXXPELI--DDVAADSPHGPEFADQLREKVEDG----RERGYQLVHGERELGSSGLSFPLVD
2o0yC           XXXXXXXXXXXPELI--DDVAADSPHGPEFADQLREKVEDG----RERGYQLVHGERELGSSGLSFPLVD
2o0yB           XXXXXXXXXXXPELI--DDVAADSPHGPEFADQLREKVEDG----RERGYQLVHGERELGSSGLSFPLVD
2o0yA           XXXXXXXXXXXPELI--DDVAADSPHGPEFADQLREKVEDG----RERGYQLVHGERELGSSGLSFPLVD
3bjnA           --------------------------------TLDKW-QSEFEKIRRHGYAVSTSEIDPGVSGISAPVK-
2o9aD           SGAGKAFLAQLSEEQVTKLLHRKLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCLAACIFD
2o9aB           SGAGKAFLAQLSEEQVTKLLHRKLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCLAACIFD
2o9aA           SGAGKAFLAQLSEEQVTKLLHRKLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCLAACIFD


                         .         .         .         +         .         .         .:280
query           PNGAVLHSVGMTGPLERIMNKQLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
1ysqA           IHGRVPYAVSITSRLKQVGEKNL------------------------------
2g7uC           AGGTVV-----------------------------------------------
2g7uB           AGGTVV-----------------------------------------------
2g7uA           AGGTVV-----------------------------------------------
1mkmB           HNGYPVAGVSISGVARKFTEEKI------------------------------
1mkmA           HNGYPVAGVSISGVARKFTEEKI------------------------------
1yspA           RFGVVIAGLSISFPTLRFSEERL------------------------------
1tf1D           DVGSVVAAISISGPSSRL-----------------------------------
1tf1C           DVGSVVAAISISGPSSRL-----------------------------------
1tf1B           DVGSVVAAISISGPSSRL-----------------------------------
1tf1A           DVGSVVAAISISGPSSRL-----------------------------------
2o0yD           SHGTVVAALTLGGPTGR------------------------------------
2o0yC           SHGTVVAALTLGGPTGR------------------------------------
2o0yB           SHGTVVAALTLGGPTGR------------------------------------
2o0yA           SHGTVVAALTLGGPTGR------------------------------------
3bjnA           --GSKLIGAISVAPAHRVSNKQ-------------------------------
2o9aD           EHREPFAAISISGPISRITDDRVT-----------------------------
2o9aB           EHREPFAAISISGPISRITDDRVT-----------------------------
2o9aA           EHREPFAAISISGPISRITDDRVT-----------------------------