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Result of BLT:PDB for sent8:ACF65897.1

[Show Plain Result]

#ERROR : Can't open dsspfile "2rd1B.bssp"
#ERROR : Can't open dsspfile "2rd1A.bssp"
#ERROR : Can't open dsspfile "2jn0A.bssp"
#ERROR : Can't open dsspfile "3bduB.bssp"
#ERROR : Can't open dsspfile "3bduA.bssp"
#ERROR : Can't open dsspfile "3fifC.bssp"
#ERROR : Can't open dsspfile "3fifB.bssp"
#ERROR : Can't open dsspfile "3fifA.bssp"
#ERROR : Can't open dsspfile "2ra2F.bssp"
#ERROR : Can't open dsspfile "2ra2E.bssp"
#ERROR : Can't open dsspfile "2ra2D.bssp"
#ERROR : Can't open dsspfile "2ra2C.bssp"
#ERROR : Can't open dsspfile "2ra2B.bssp"
#ERROR : Can't open dsspfile "2ra2A.bssp"
#ERROR : Can't open dsspfile "3fifH.bssp"
#ERROR : Can't open dsspfile "3fifE.bssp"

## Summary of PDB Search
:73
    8e-23 100%  2rd1B  [x.x.x] PUTATIVE OUTER MEMBRANE LIPOPROTEIN
    3e-22 100%  2rd1A  [x.x.x] PUTATIVE OUTER MEMBRANE LIPOPROTEIN
    5e-13  53%  2jn0A  [x.x.x] HYPOTHETICAL LIPOPROTEIN YGDR
    7e-10  51%  3bduB  [x.x.x] PUTATIVE LIPOPROTEIN
    7e-10  51%  3bduA  [x.x.x] PUTATIVE LIPOPROTEIN
    1e-08  52%  3fifC  [x.x.x] UNCHARACTERIZED LIPOPROTEIN YGDR
    1e-08  52%  3fifB  [x.x.x] UNCHARACTERIZED LIPOPROTEIN YGDR
    1e-08  52%  3fifA  [x.x.x] UNCHARACTERIZED LIPOPROTEIN YGDR
    3e-08  53%  2ra2F  [x.x.x] PUTATIVE LIPOPROTEIN
    3e-08  53%  2ra2E  [x.x.x] PUTATIVE LIPOPROTEIN
    3e-08  53%  2ra2D  [x.x.x] PUTATIVE LIPOPROTEIN
    3e-08  53%  2ra2C  [x.x.x] PUTATIVE LIPOPROTEIN
    3e-08  53%  2ra2B  [x.x.x] PUTATIVE LIPOPROTEIN
    3e-08  53%  2ra2A  [x.x.x] PUTATIVE LIPOPROTEIN
    4e-08  53%  3fifH  [x.x.x] UNCHARACTERIZED LIPOPROTEIN YGDR
    5e-06  50%  3fifE  [x.x.x] UNCHARACTERIZED LIPOPROTEIN YGDR
:73

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxxxxxxxxxxxxxxxxxTTNYVMTTKNGQTIVTQGKPQLDKETGMTSYTDQEGNQREINSNDVAQLI
2rd1B           --------------------TTNYV-TTKNGQTIVTQGKPQLDKETG-TSYTDQEGNQREINSNDVAQLI
2rd1A           ---------------------TNYV-TTKNGQTIVTQGKPQLDKETG-TSYTDQEGNQREINSNDVAQLI
2jn0A           ----------------------DYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQII
3bduB           --------------------SSNYVLHTNDGRTIVAEGKPKVDDETGI-SYTDAYGQQQQINRDNVKE--
3bduA           --------------------SSNYVLHTNDGRTIVAEGKPKVDDETGI-SYTDAYGQQQQINRDNVKE--
3fifC           --------------------SSDYV-ATKDGR-ILTDGKPEIDDDTGLVSYHDQQGN-AQINRDDVSQII
3fifB           --------------------SSDYV-ATKDGR-ILTDGKPEIDDDTGLVSYHDQQGN-AQINRDDVSQII
3fifA           -------------------------VATKDGR-ILTDGKPEIDDDTGLVSYHDQQGN-AQINRDDVSQII
2ra2F           ----------------------NYVHTN-DGRSIVTDGKPQTDNDTGI-SYKDANGNKQQINRTDVKEV-
2ra2E           ----------------------NYVHTN-DGRSIVTDGKPQTDNDTGI-SYKDANGNKQQINRTDVKEV-
2ra2D           ----------------------NYVHTN-DGRSIVTDGKPQTDNDTGI-SYKDANGNKQQINRTDVKEV-
2ra2C           ----------------------NYVHTN-DGRSIVTDGKPQTDNDTGI-SYKDANGNKQQINRTDVKEV-
2ra2B           ----------------------NYVHTN-DGRSIVTDGKPQTDNDTGI-SYKDANGNKQQINRTDVKEV-
2ra2A           ----------------------NYVHTN-DGRSIVTDGKPQTDNDTGI-SYKDANGNKQQINRTDVKEV-
3fifH           --------------------SSDYV-ATKDGR-ILTDGKPEIDDDTGLVSYHDQQGAQ--INRDDVSQII
3fifE           --------------------SSDYV-ATKDGR-ILTDGKPEIDDDTGLVSYHD-----AQINRDDVSQII


                         .         .         *         .         .         .         .:140
query           KAD
2rd1B           KAD
2rd1A           KAD
2jn0A           E--
3bduB           ---
3bduA           ---
3fifC           E--
3fifB           E--
3fifA           E--
2ra2F           ---
2ra2E           ---
2ra2D           ---
2ra2C           ---
2ra2B           ---
2ra2A           ---
3fifH           E--
3fifE           E--