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Result of RPS:SCP for spne4:ACF55106.1

[Show Plain Result]

#ERROR : Can't open dsspfile "1o5zA2.bssp"
#ERROR : Can't open dsspfile "1fgsA2.bssp"
#ERROR : Can't open dsspfile "1e8cA3.bssp"
#ERROR : Can't open dsspfile "1e0dA3.bssp"
#ERROR : Can't open dsspfile "1gqqA3.bssp"
#ERROR : Can't open dsspfile "1j6uA3.bssp"
#ERROR : Can't open dsspfile "1gg4A4.bssp"
#ERROR : Can't open dsspfile "1o5zA1.bssp"
#ERROR : Can't open dsspfile "1e8cA2.bssp"
#ERROR : Can't open dsspfile "1gqqA2.bssp"
#ERROR : Can't open dsspfile "1j6uA2.bssp"
#ERROR : Can't open dsspfile "1fgsA1.bssp"
#ERROR : Can't open dsspfile "1gg4A1.bssp"

## Summary of PDB Search
:440
    4e-55  36%  1o5zA2 [c.72.2.2] FOLYLPOLYGLUTAMATE SYNTHASE/DIHYDROFOLATE A:-2 --
    1e-42  34%  1fgsA2 [c.72.2.2] FOLYLPOLYGLUTAMATE SYNTHETASE A:1 -- 296
    7e-24  17%  1e8cA3 [c.72.2.1] UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-
    3e-22  18%  1e0dA3 [c.72.2.1] UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
    5e-22  10%  1gqqA3 [c.72.2.1] UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE A:107 --
    2e-20  17%  1j6uA3 [c.72.2.1] UDP-N-ACETYLMURAMATE-ALANINE LIGASE MURC A:89 --
    1e-17  14%  1gg4A4 [c.72.2.1] UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6- A:99
    3e-12  28%  1o5zA1 [c.59.1.2] FOLYLPOLYGLUTAMATE SYNTHASE/DIHYDROFOLATE A:294
    1e-09  15%  1e8cA2 [c.59.1.1] UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-
    1e-08  15%  1gqqA2 [c.59.1.1] UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE A:322 --
    8e-08  36%  1j6uA2 [c.59.1.1] UDP-N-ACETYLMURAMATE-ALANINE LIGASE MURC A:296 --
    1e-06  40%  1fgsA1 [c.59.1.2] FOLYLPOLYGLUTAMATE SYNTHETASE A:297 -- 425
    2e-05  14%  1gg4A1 [c.59.1.1] UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6- A:313
:440

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           MKEIENNQWIANYRTDQPHFGLERMVELLALRGNPHLKLKVLHIGGTNGKGSTIAFLKKMLEKLGLRVGV
1o5zA2          MAYLEVLRYLYH----KVKPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGS
1fgsA2          MNYTETVAYI--HSFPRLAGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGL
1e8cA3          ----------------------------------PSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAV
1e0dA3          -------------------------------LFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGV
1gqqA3          -----------------------------QMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTF
1j6uA3          ----------------------------------------------------------------------
1gg4A4          ---------------------------------------RVVALTGSSGKTSVKEXTAAILSQCGNTLYT
1o5zA1          ----------------------------------------------------------------------
1e8cA2          ----------------------------------------------------------------------
1gqqA2          ----------------------------------------------------------------------
1j6uA2          ----------------------------------------------------------------------
1fgsA1          ----------------------------------------------------------------------
1gg4A1          ----------------------------------------------------------------------


                         .         .         *         .         .         .         .:140
query           FSSPYLIHYTDQISINGESISEARLEALMADYQSLLEGEAVANLQGTTEFEIITALAYDYFASEQVDVAI
1o5zA2          YYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAV
1fgsA2          YTSPFIMRFNERIMIDHEPIPDAALVNAVAFRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAV
1e8cA3          XGT------------VGNGLLGKVIPT-----------------ENTTGSAVDVQHELAGLVDQGATFCA
1e0dA3          GGN--------------------------------------------------IGLPALMLLDDECELYV
1gqqA3          VSRYLIAEADEFLHLQPMVSVVTNMEFEKMKATYVKFLHNLPF-YGLAVMCADDPVLMELVPKVGRQVIT
1j6uA3          -----------------------------------------------TVFLGGIXDSLEHGNEKGNGPVV
1gg4A4          AGNL------------------------------------------NNDIGVPXTLLRLTPEYDYAVIEL
1o5zA1          ----------------------------------------------------------------------
1e8cA2          ----------------------------------------------------------------------
1gqqA2          ----------------------------------------------------------------------
1j6uA2          ----------------------------------------------------------------------
1fgsA1          ----------------------------------------------------------------------
1gg4A1          ----------------------------------------------------------------------


                         +         .         .         .         .         *         .:210
query           MEVGMGGLLDSTNVCQPILTGITTIGLDHVALLGDTLEAIAEQKAGIIKQGMPLVTGRIAPEALTVIDRI
1o5zA2          LEVGLGGRLDATNVVFPLCSTIVTVD-------RYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDV
1fgsA2          IEVG-----DSTNVITPVVSVLTEVALDT-------ITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAK
1e8cA3          XEVSSHGLVQRVAALKFAASVFTNLSRDHLDYHG-DXEHYEAAXWLLYSECGQAIINADDEVGRRWLAKL
1e0dA3          LELSSFQL-ETTSSLQAVAATILNVTEDF------GLQQYRAAKLRIYENAKVCVVNADDALTMPIADE-
1gqqA3          YGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGK----------------------------
1j6uA3          YELDESEEFFSEF--SPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFAEDELTSHLGDVT
1gg4A4          GANHQGEIAWTVSLTRPEAALVNNLA---------SLAGVAKAKGEIFSGLPENGIAIXNADNNDWLNWQ
1o5zA1          ----------------------------------------------------------------------
1e8cA2          ----------------------------------------------------------------------
1gqqA2          ----------------------------------------------------------------------
1j6uA2          ----------------------------------------------------------------------
1fgsA1          ----------------------------------------------------------------------
1gg4A1          ----------------------------------------------------------------------


                         .         .         .         +         .         .         .:280
query           AEEKDAPRLAYGTDYQVRHQESVVTGEVFDYTSAVRQGRFQTSLLGLYQIENAGMAIALLDTFCQEDGRE
1o5zA2          ARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKT----LEATGLP
1fgsA2          VATTGSQWLRFDRDFSVPKAKLHGWGQRFTYDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWP
1e8cA3          PDEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLXGAFNVSNLLLALATL----------
1e0dA3          ------RCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALAD---------
1gqqA3          ----------------------------------------------------------------------
1j6uA3          FGVK-------KGTYTLEXRSASRAEQKAXEKNGKRYLELKLKVPGFHNVLNALAVIALF----------
1gg4A4          SVIGSRKVWRFSPDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAAL-----------
1o5zA1          ----------------------------------------------------------------------
1e8cA2          ----------------------------------------------------------------------
1gqqA2          ----------------------------------------------------------------------
1j6uA2          ----------------------------------------------------------------------
1fgsA1          ----------------------------------------------------------------------
1gg4A1          ----------------------------------------------------------------------


                         .         *         .         .         .         .         +:350
query           LASNDFLGQALEETSWPGRLEIVSRDPLMILDGAHNPHAIKALLVTLQERFADHHKEILFTCIKTKALED
1o5zA2          L-SEKAIREGLKNAKN------------------------------------------------------
1fgsA2          L-TPQNIRQGLAAS--------------------------------------------------------
1e8cA3          ----------------------------------------------------------------------
1e0dA3          ----------------------------------------------------------------------
1gqqA3          ----------------------------------------------------------------------
1j6uA3          ----------------------------------------------------------------------
1gg4A4          ----------------------------------------------------------------------
1o5zA1          -----------------GRFEILEKNKMYILDGAHNPHGAESLVRSLKLYFNGEPLSLVIGILDDKNRED
1e8cA2          ----------------CGRXEVFTGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGGGDRDKGKRP
1gqqA2          ----------------GRRFDQLGEKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRD
1j6uA2          ----------------HRRFSIAFHDPYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIF----------
1fgsA1          ---------------WPARLEKISDTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGYA--------
1gg4A1          ----------------PGRLFPIQLAELLDDSYNANVGSXTAAVQVLAEXPGYRVLVVGDXAELGAESEA


                         .         .         .         .         *         .         .:420
query           MLDLLGAMPDTELTLTHFADSRATDESVLKEAAKSRNLSYQDWHDFLEQNLTDKKEEKQTVRIVTGSLYF
1o5zA2          ----------------------------------------------------------------------
1fgsA2          ----------------------------------------------------------------------
1e8cA3          ----------------------------------------------------------------------
1e0dA3          ----------------------------------------------------------------------
1gqqA3          ----------------------------------------------------------------------
1j6uA3          ----------------------------------------------------------------------
1gg4A4          ----------------------------------------------------------------------
1o5zA1          ILRKYTGIFERVIVTR-VPSPRMKDMNSLVDMAKKFFKNVEVIEDPLEAIE-----STERATVVTGSLFL
1e8cA2          LXGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGXLDAGHGRAEAVTCAVXQAKE--NDVVLVAGKGHE
1gqqA2          LFDDF-----------------------------------------------------------------
1j6uA2          ----------------------------------------------------------------------
1fgsA1          ----------------------------------------------------------------------
1gg4A1          CHVQVGEAAKAA--GIDRVLSVGKQSHAISTASG-VGEHFADKTALITRLKLLIAEQQVITILVKGSRSA


                         .         .         +         .         .         .         .:490
query           LSQVRAYLMERKNENGYxxx
1o5zA2          --------------------
1fgsA2          --------------------
1e8cA3          --------------------
1e0dA3          --------------------
1gqqA3          --------------------
1j6uA3          --------------------
1gg4A4          --------------------
1o5zA1          VGYVREFLTTGKINEEW---
1e8cA2          DYQIVGNQ------------
1gqqA2          --------------------
1j6uA2          --------------------
1fgsA1          --------------------
1gg4A1          AXEE----------------