[GTOP][HELP][ORGANISMS][SEARCH][SUMMARY][COMMENT/QUESTION(gtop-admin@spock.genes.nig.ac.jp)]

Result of RPS:SCP for spne4:ACF55561.1

[Show Plain Result]

#ERROR : Can't open dsspfile "1a0pA2.bssp"
#ERROR : Can't open dsspfile "1crxA2.bssp"
#ERROR : Can't open dsspfile "1aihA.bssp"
#ERROR : Can't open dsspfile "1p7dA.bssp"
#ERROR : Can't open dsspfile "1ae9A.bssp"
#ERROR : Can't open dsspfile "1crxA1.bssp"
#ERROR : Can't open dsspfile "1a0pA1.bssp"
#ERROR : Can't open dsspfile "1f0xA2.bssp"

## Summary of PDB Search
:321
    2e-21  30%  1a0pA2 [d.163.1.1] SITE-SPECIFIC RECOMBINASE XERD A:111 -- 292
    2e-20  13%  1crxA2 [d.163.1.1] CRE RECOMBINASE A:130 -- 341
    4e-19  27%  1aihA  [d.163.1.1] HP1 INTEGRASE
    1e-18  18%  1p7dA  [d.163.1.1] INTEGRASE
    1e-18  16%  1ae9A  [d.163.1.1] LAMBDA INTEGRASE
    7e-08  11%  1crxA1 [a.60.9.1] CRE RECOMBINASE A:20 -- 129
    5e-05  19%  1a0pA1 [a.60.9.1] SITE-SPECIFIC RECOMBINASE XERD A:3 -- 100
    2e-04  17%  1f0xA2 [d.145.1.1] D-LACTATE DEHYDROGENASE A:9 -- 273
:321

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNNNLLQLFITAKQVEGCSSKTIRYYQRT
1a0pA2          ----------------------------------------------------------------------
1crxA2          ----------------------------------------------------------------------
1aihA           ----------------------------------------------------------------------
1p7dA           ---------------------------------------------WLDRYEKILASRGIKQKTLINYMSK
1ae9A           ----------------------------------------------------------------------
1crxA1          ------------------------------------------SDEVRKNLMDMFRDRAFSEHTWKMLLSV
1a0pA1          ------------------------------------------DLARIEQFLDALWLENLAENTLNAYRRD
1f0xA2          ----------------------------------------------------------------------


                         .         .         *         .         .         .         .:140
query           IENLFNAIKESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYXXXXXXXXXXXXX
1a0pA2          ----------------------------------------------------------------------
1crxA2          ----------------------------------------------------------------------
1aihA           ----------------------------------------------------------------------
1p7dA           IKAIRRGLP--DAPLTTKEIAAMLNGYI--DEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAK
1ae9A           ----------------------------------------------------------------------
1crxA1          CRSWAAWCKLKWFPAEPEDVRDYLLYLQ-ARGLAVKTIQQHLGQLNMLHRRSGLPRP-------------
1a0pA1          LSMMVEWLHHR----GLTLATAQSDDLQAERLSSARLLSAVRRL----FQYLYREKF-------------
1f0xA2          ----------------------------------------------------------------------


                         +         .         .         .         .         *         .:210
query           TEQNVKETYTDEHLEIMRDNCENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPV
1a0pA2          -----------------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV
1crxA2          KQALAFERTDFDQVRSLMENSDDIRNLAFLGIAYNTLLRIAEIARIRVKDISRTDGGRMLIHVSTAGVEK
1aihA           ------------------DNSRNPDLGLIVRICLATGARWSEAETLTQSQVM-PYKITFTNTKSKKNRTV
1p7dA           SEVRRSRLTADEYLKIYQAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYL-YVEQSKTGVKIAI
1ae9A           -----RSRLTADEYLKIYQAAESSWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQ-SKTGVKIAI
1crxA1          ----------------------------------------------------------------------
1a0pA1          ----------------------------------------------------------------------
1f0xA2          --------------------YTEMSLFARIN-------EDGKLTLVNHLGIDLGETPEQILSHDGRHAHD


                         .         .         .         +         .         .         .:280
query           YFDARTKIHLRNYLNDRKDSHPALFVTLVGKAQRLGIAGVEIRLRKLGDKLGIQKVHPHKFRRTLATKAI
1a0pA2          PLGEEAVYWLETYLEHGRNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIEKLSPHVLRHAFATHLL
1crxA2          ALSLGVTNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRAWSGHSARVGAARDMA
1aihA           PISDELFDMLPKKRGRLFNDAYESFENAVLRA--------EIELPK--------GQLTHVLRHTFASHFM
1p7dA           PTALHIDALGISMKETLDKCKGGETIIASTRREPLSSGTVSRYFMRARKASGLSFPTFHELRSL-SARLY
1ae9A           PTALHIDALGISMKETLKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDFHELRSLSARLY
1crxA1          ----------------------------------------------------------------------
1a0pA1          ----------------------------------------------------------------------
1f0xA2          YDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAV--FAVRLDTF-----------------------


                         .         *         .         .         .         .         +:350
query           DKGMPIEQVQKLLGHSKIDTTLAYAMVNQNNVKHSHQKFxx
1a0pA2          NHGADLRVVQMLLSDLSTTQIYTH-----------------
1crxA2          RAGVSIPEIMQAGGWTNVNIVMNYIRNLDSETGAMVRLL--
1aihA           MNGGNILVLKEILGHSTIEMTMRYAHFAPSHLE--------
1p7dA           EKQISDKFAQHLLGHKSDTMA--------------------
1ae9A           EKQISDKFAQHLLGHFRDDRGREWD----------------
1crxA1          -----------------------------------------
1a0pA1          -----------------------------------------
1f0xA2          -----------------------------------------