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Result of BLT:PDB for tthe0:lysR.1

[Show Plain Result]

#ERROR : Can't open dsspfile "2f97A.bssp"
#ERROR : Can't open dsspfile "2f8dB.bssp"
#ERROR : Can't open dsspfile "2f8dA.bssp"
#ERROR : Can't open dsspfile "2f7aB.bssp"
#ERROR : Can't open dsspfile "2f7aA.bssp"
#ERROR : Can't open dsspfile "2f78B.bssp"
#ERROR : Can't open dsspfile "2f78A.bssp"
#ERROR : Can't open dsspfile "2f6gB.bssp"
#ERROR : Can't open dsspfile "2f6gA.bssp"
#ERROR : Can't open dsspfile "2h9bA.bssp"
#ERROR : Can't open dsspfile "2h99B.bssp"
#ERROR : Can't open dsspfile "2h99A.bssp"
#ERROR : Can't open dsspfile "2f6pB.bssp"
#ERROR : Can't open dsspfile "2f6pA.bssp"
#ERROR : Can't open dsspfile "2h98A.bssp"
#ERROR : Can't open dsspfile "2h9qD.bssp"
#ERROR : Can't open dsspfile "2h9qC.bssp"
#ERROR : Can't open dsspfile "2h9qB.bssp"
#ERROR : Can't open dsspfile "2h9qA.bssp"
#ERROR : Can't open dsspfile "3glbC.bssp"
#ERROR : Can't open dsspfile "3glbB.bssp"
#ERROR : Can't open dsspfile "2f7cA.bssp"
#ERROR : Can't open dsspfile "2f7bA.bssp"
#ERROR : Can't open dsspfile "2hxrB.bssp"
#ERROR : Can't open dsspfile "2hxrA.bssp"
#ERROR : Can't open dsspfile "3hfuC.bssp"
#ERROR : Can't open dsspfile "3hfuB.bssp"
#ERROR : Can't open dsspfile "3hfuA.bssp"
#ERROR : Can't open dsspfile "2ql3A.bssp"
#ERROR : Can't open dsspfile "1i6aA.bssp"
#ERROR : Can't open dsspfile "1i69B.bssp"
#ERROR : Can't open dsspfile "1i69A.bssp"

## Summary of PDB Search
:285
    2e-12  34%  2f97A  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    2e-12  34%  2f8dB  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    2e-12  34%  2f8dA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    2e-12  34%  2f7aB  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    2e-12  34%  2f7aA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    2e-12  34%  2f78B  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    2e-12  34%  2f78A  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    2e-12  34%  2f6gB  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    2e-12  34%  2f6gA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    3e-12  34%  2h9bA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    3e-12  34%  2h99B  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    3e-12  34%  2h99A  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    9e-11  36%  2f6pB  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    9e-11  36%  2f6pA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM
    6e-10  29%  2h98A  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CATM
    1e-09  29%  2h9qD  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CATM
    1e-09  29%  2h9qC  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CATM
    1e-09  29%  2h9qB  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CATM
    1e-09  29%  2h9qA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CATM
    1e-09  29%  3glbC  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CATM
    1e-09  29%  3glbB  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CATM
    4e-09  28%  2f7cA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CATM
    4e-09  28%  2f7bA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CATM
    5e-06  29%  2hxrB  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CYNR
    5e-06  29%  2hxrA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CYNR
    5e-06  29%  3hfuC  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CYNR
    5e-06  29%  3hfuB  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CYNR
    5e-06  29%  3hfuA  [x.x.x] HTH-TYPE TRANSCRIPTIONAL REGULATOR CYNR
    4e-05  37%  2ql3A  [x.x.x] PROBABLE TRANSCRIPTIONAL REGULATOR, LYSR FAMILY
    2e-04  33%  1i6aA  [c.94.1] HYDROGEN PEROXIDE-INDUCIBLE GENES ACTIVATOR
    2e-04  33%  1i69B  [c.94.1] HYDROGEN PEROXIDE-INDUCIBLE GENES ACTIVATOR
    2e-04  33%  1i69A  [c.94.1] HYDROGEN PEROXIDE-INDUCIBLE GENES ACTIVATOR
:285

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
2f97A           ----------------------------------------------------------------------
2f8dB           ----------------------------------------------------------------------
2f8dA           ----------------------------------------------------------------------
2f7aB           ----------------------------------------------------------------------
2f7aA           ----------------------------------------------------------------------
2f78B           ----------------------------------------------------------------------
2f78A           ----------------------------------------------------------------------
2f6gB           ----------------------------------------------------------------------
2f6gA           ----------------------------------------------------------------------
2h9bA           ----------------------------------------------------------------------
2h99B           ----------------------------------------------------------------------
2h99A           ----------------------------------------------------------------------
2f6pB           ----------------------------------------------------------------------
2f6pA           ----------------------------------------------------------------------
2h98A           ----------------------------------------------------------------------
2h9qD           ----------------------------------------------------------------------
2h9qC           ----------------------------------------------------------------------
2h9qB           ----------------------------------------------------------------------
2h9qA           ----------------------------------------------------------------------
3glbC           ----------------------------------------------------------------------
3glbB           ----------------------------------------------------------------------
2f7cA           ----------------------------------------------------------------------
2f7bA           ----------------------------------------------------------------------
2hxrB           ----------------------------------------------------------------------
2hxrA           ----------------------------------------------------------------------
3hfuC           ----------------------------------------------------------------------
3hfuB           ----------------------------------------------------------------------
3hfuA           ----------------------------------------------------------------------
2ql3A           ----------------------------------------------------------------------
1i6aA           ----------------------------------------------------------------------
1i69B           ----------------------------------------------------------------------
1i69A           ----------------------------------------------------------------------


                         .         .         *         .         .         .         .:140
query           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVEVLEMHTPEQVRALKEGRLDYGLAG
2f97A           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2f8dB           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2f8dA           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2f7aB           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2f7aA           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2f78B           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2f78A           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2f6gB           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2f6gA           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2h9bA           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2h99B           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2h99A           --------------------------------------------IELYEMGTKAQTEALKEGRIDAGFGR
2f6pB           ---------------------------------------------------TKAQTEALKEGRIDAGFGR
2f6pA           ---------------------------------------------------TKAQTEALKEGRIDAGFGR
2h98A           --------------------------------------------IELIECGTKDQINALKQGKIDLGFGR
2h9qD           --------------------------------------------IELIECGTKDQINALKQGKIDLGFGR
2h9qC           --------------------------------------------IELIECGTKDQINALKQGKIDLGFGR
2h9qB           --------------------------------------------IELIECGTKDQINALKQGKIDLGFGR
2h9qA           --------------------------------------------IELIECGTKDQINALKQGKIDLGFGR
3glbC           --------------------------------------------IELIECGTKDQINALKQGKIDLGFGR
3glbB           --------------------------------------------IELIECGTKDQINALKQGKIDLGFGR
2f7cA           --------------------------------------------IELIECGTKDQINALKQGKIDLGFGR
2f7bA           --------------------------------------------IELIECGTKDQINALKQGKIDLGFGR
2hxrB           -----------------------------------------------------EKIEDLCRDELDVGIAF
2hxrA           -----------------------------------------------------EKIEDLCRDELDVGIAF
3hfuC           -----------------------------------------------------EKIEDLCRDELDVGIAF
3hfuB           -----------------------------------------------------EKIEDLCRDELDVGIAF
3hfuA           -----------------------------------------------------EKIEDLCRDELDVGIAF
2ql3A           ----------------------------------------------------------LEGGELDVAIVY
1i6aA           ------------------------------------------------EAQTHQLLAQLDSGKLDAVILA
1i69B           ------------------------------------------------EAQTHQLLAQLDSGKLDAVILA
1i69A           ------------------------------------------------EAQTHQLLAQLDSGKLDAVILA


                         +         .         .         .         .         *         .:210
query           LKVEDPEVAKEPLLRVPIVVALPETHPLAPRARVPLRALKEEXXXXXXXXXXXXXYEAFMEVFRRAGFAP
2f97A           LKISDPAIKRTLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2f8dB           LKISDPAIKRTLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2f8dA           LKISDPAIKRTLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2f7aB           LKISDPAIKRTLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2f7aA           LKISDPAIKRTLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2f78B           LKISDPAIKRTLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2f78A           LKISDPAIKRTLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2f6gB           LKISDPAIKRTLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2f6gA           LKISDPAIKRTLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2h9bA           LKISDPAIKHSLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2h99B           LKISDPAIKHSLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2h99A           LKISDPAIKHSLLRNERLMVAVHASHPLMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEP
2f6pB           LKISDPAI-KRTLLRNERLVAVHASHPLNQKDKVHLNDLIDE-KILLYPSSPKPNFSTHVNIFSDHGLEP
2f6pA           LKISDPAI-KRTLLRNERLVAVHASHPLNQKDKVHLNDLIDE-KILLYPSSPKPNFSTHVNIFSDHGLEP
2h98A           LKITDPAIRRIMLHKEQLKLAIHKHHHLNQFAAVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVP
2h9qD           LKITDPAIRHIVLHKEQLKLAIHKHHHLNQFAAVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVP
2h9qC           LKITDPAIRHIVLHKEQLKLAIHKHHHLNQFAAVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVP
2h9qB           LKITDPAIRHIVLHKEQLKLAIHKHHHLNQFAAVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVP
2h9qA           LKITDPAIRHIVLHKEQLKLAIHKHHHLNQFAAVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVP
3glbC           LKITDPAIRHIVLHKEQLKLAIHKHHHLNQFAAVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVP
3glbB           LKITDPAIRHIVLHKEQLKLAIHKHHHLNQFAAVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVP
2f7cA           LKITDPAIRRIVLHKEQLKLAIHKHHHPNQFAAVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVP
2f7bA           LKITDPAIRRIVLHKEQLKLAIHKHHHPNQFAAVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVP
2hxrB           APVHSPELEAIPLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATR--EQIDHYCEKAGLHP
2hxrA           APVHSPELEAIPLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATR--EQIDHYCEKAGLHP
3hfuC           APVHSPELEAIPLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATR--EQIDHYCEKAGLHP
3hfuB           APVHSPELEAIPLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATR--EQIDHYCEKAGLHP
3hfuA           APVHSPELEAIPLLTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATR--EQIDHYCEKAGLHP
2ql3A           DLDLSPEWQTVPLTREPVV--LGAEHPLAGDGPVRLADLAEHPVLLDAPPSTNHA-----DVCREAGFAP
1i6aA           LVKESEAFIEVPLFDEPMLLAIYEDHPWANREAVPMADLAGE----------------------------
1i69B           LVKESEAFIEVPLFDEPMLLAIYEDHPWANREAVPMADLAGE----------------------------
1i69A           LVKESEAFIEVPLFDEPMLLAIYEDHPWANREAVPMADLAGE----------------------------


                         .         .         .         +         .         .         .:280
query           KVVREVARFSQAVSLVAAGLGVHLTLAPYRVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
2f97A           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2f8dB           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2f8dA           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2f7aB           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2f7aA           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2f78B           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2f78A           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2f6gB           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2f6gA           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2h9bA           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2h99B           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2h99A           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2f6pB           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2f6pA           TKINEVREVQLALGLVAAGEGISLVPA-------------------------------------------
2h98A           SKLTEIREIQLALGLVAAGEGV------------------------------------------------
2h9qD           SKLTEIREIQLALGLVAAGEGV------------------------------------------------
2h9qC           SKLTEIREIQLALGLVAAGEGV------------------------------------------------
2h9qB           SKLTEIREIQLALGLVAAGEGV------------------------------------------------
2h9qA           SKLTEIREIQLALGLVAAGEGV------------------------------------------------
3glbC           SKLTEIREIQLALGLVAAGEGV------------------------------------------------
3glbB           SKLTEIREIQLALGLVAAGEGV------------------------------------------------
2f7cA           SKLTEIREIQLALGLVAAGEGV------------------------------------------------
2f7bA           SKLTEIREIQLALGLVAAGEGV------------------------------------------------
2hxrB           QVVIEANSISAVLELI------------------------------------------------------
2hxrA           QVVIEANSISAVLELI------------------------------------------------------
3hfuC           QVVIEANSISAVLELI------------------------------------------------------
3hfuB           QVVIEANSISAVLELI------------------------------------------------------
3hfuA           QVVIEANSISAVLELI------------------------------------------------------
2ql3A           RVAYRTANFETARAFVGRGLGWTLLLQRPRV---------------------------------------
1i6aA           ----------------------------------------------------------------------
1i69B           ----------------------------------------------------------------------
1i69A           ----------------------------------------------------------------------


                         .         *         .         .         .         .         +:350
query           xxxxx
2f97A           -----
2f8dB           -----
2f8dA           -----
2f7aB           -----
2f7aA           -----
2f78B           -----
2f78A           -----
2f6gB           -----
2f6gA           -----
2h9bA           -----
2h99B           -----
2h99A           -----
2f6pB           -----
2f6pA           -----
2h98A           -----
2h9qD           -----
2h9qC           -----
2h9qB           -----
2h9qA           -----
3glbC           -----
3glbB           -----
2f7cA           -----
2f7bA           -----
2hxrB           -----
2hxrA           -----
3hfuC           -----
3hfuB           -----
3hfuA           -----
2ql3A           -----
1i6aA           -----
1i69B           -----
1i69A           -----