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Result of RPS:PDB for tthe0:AAS81728.1

[Show Plain Result]

#ERROR : Can't open dsspfile "3bzcA.bssp"
#ERROR : Can't open dsspfile "3bzkA.bssp"
#ERROR : Can't open dsspfile "2ahoB.bssp"
#ERROR : Can't open dsspfile "2ba0A.bssp"
#ERROR : Can't open dsspfile "2ba0B.bssp"
#ERROR : Can't open dsspfile "2cqoA.bssp"
#ERROR : Can't open dsspfile "3cw2C.bssp"
#ERROR : Can't open dsspfile "2ckzB.bssp"
#ERROR : Can't open dsspfile "3c19A.bssp"
#ERROR : Can't open dsspfile "1ah9A.bssp"
#ERROR : Can't open dsspfile "2a1aA.bssp"
#ERROR : Can't open dsspfile "1d7qA.bssp"
#ERROR : Can't open dsspfile "2ba1A.bssp"
#ERROR : Can't open dsspfile "2ckzD.bssp"
#ERROR : Can't open dsspfile "2c35B.bssp"
#ERROR : Can't open dsspfile "2a19A.bssp"
#ERROR : Can't open dsspfile "2e3uA.bssp"
#ERROR : Can't open dsspfile "2bh8A.bssp"
#ERROR : Can't open dsspfile "2asbA.bssp"
#ERROR : Can't open dsspfile "2bh8B.bssp"

## Summary of PDB Search
:142
    2e-11  36%  3bzcA  [x.x.x] TEX
    4e-11  36%  3bzkA  [x.x.x] TEX
    1e-10  12%  2ahoB  [x.x.x] TRANSLATION INITIATION FACTOR 2 ALPHA SUBUNIT
    5e-09  21%  2ba0A  [x.x.x] ARCHEAL EXOSOME RNA BINDING PROTEIN RRP4
    5e-09  21%  2ba0B  [x.x.x] ARCHEAL EXOSOME RNA BINDING PROTEIN RRP4
    1e-08  27%  2cqoA  [x.x.x] NUCLEOLAR PROTEIN OF 40 KDA
    2e-08   7%  3cw2C  [x.x.x] TRANSLATION INITIATION FACTOR 2 SUBUNIT ALPHA
    2e-08  10%  2ckzB  [x.x.x] DNA-DIRECTED RNA POLYMERASE III 25 KD
    8e-08  12%  3c19A  [x.x.x] UNCHARACTERIZED PROTEIN MK0293
    1e-07  30%  1ah9A  [x.x.x] INITIATION FACTOR 1
    1e-07  10%  2a1aA  [x.x.x] EUKARYOTIC TRANSLATION INITIATION FACTOR 2 ALPHA
    1e-07  17%  1d7qA  [b.40.4] TRANSLATION INITIATION FACTOR 1A
    5e-06  14%  2ba1A  [x.x.x] ARCHAEAL EXOSOME RNA BINDING PROTEIN CSL4
    1e-05  10%  2ckzD  [x.x.x] DNA-DIRECTED RNA POLYMERASE III 25 KD
    2e-05  14%  2c35B  [x.x.x] DNA-DIRECTED RNA POLYMERASE II 19 KDA
    4e-05  19%  2a19A  [x.x.x] EUKARYOTIC TRANSLATION INITIATION FACTOR 2 ALPHA
    7e-05   4%  2e3uA  [x.x.x] HYPOTHETICAL PROTEIN PH1566
    9e-05  48%  2bh8A  [x.x.x] 1B11
    1e-04   9%  2asbA  [x.x.x] TRANSCRIPTION ELONGATION PROTEIN NUSA
    6e-04  55%  2bh8B  [x.x.x] 1B11
:142

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxxxxxxxxxxxxxxVELEAGTXXXXXXXXXXSFGAFVELAGGEQGLVHISQIAHEYVTNVRDYLNEG
3bzcA           -----------------------------------FGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAG
3bzkA           -----------------------------------FGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAG
2ahoB           -----------------------------------SGLITVRTNEPLGVEKIKEVISKALENIEQDYESL
2ba0A           -----------------------------------NGWAVDIYSPYQAFLPVSENPEMKPNKPNEVLDIG
2ba0B           -----------------------------------NGWAVDIYSPYQAFLPVSENPEMKPNKPNEVLDIG
2cqoA           ------------------LPALYTIFQGEVAMVTDYGAFIKIPGRKQGLVHRTHMSSCRVDKPSEIVDVG
3cw2C           -----------------------------------ITVRTNEPLG---VEKIKEVISKALENIEQDYESL
2ckzB           -----------------------------------EGIKVSLLGIFDDIFIPQNMLFEGCMDTKLYFDVN
3c19A           -----------------------------------EGEVVTVKAEFDECREIGEETGIPPREVKAAARVG
1ah9A           ----------------------------------PNTMFVELENGHVVTAHISGK----MRKNYIRILTG
2a1aA           -----------------------------------YCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLS
1d7qA           -------------------FKEDGQEYAQVIKMLGNGRLAMCFDGVKRLCHIRGKLRKKVW-----INTS
2ba1A           ------------------EIVKGDVVLGRVVDLRNSIALIEVSSKKGENLHVSNVDEGYVKEISEAVGYL
2ckzD           -----------------------------------EGIKVSLLGIFDDIFIPQNMLFEGCEETKLYFDVN
2c35B           -----------------------------------VGLFTEIGPMS-CFISRHSIPSEMEFDPNSNPPCY
2a19A           ------------------YPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILL------SSIQKLIRVG
2e3uA           -----------------VLAIGRGFSPERAFRLLNEGEYLEIINLT-DIIALPRVRGRIIGRKGRTRQII
2bh8A           -----------------------------------FGIFIGLDGGIDGLVHLSDISWAQA----------
2asbA           -------------------TREGEIVAGVIQRDSRANARGLVVVRIGTETKASEVIPAAEQVPGESYEHG
2bh8B           -----------------------------------FGIFIGLDGGIDGLVHLSDISW-------------


                         .         .         *         .         .         .         .:140
query           DIVQVLIKGRDAKGRLDLSIKDLTXXXXXXXXXXXXXXXXKQSPEFENxxxxxxxxxxxxxxxxxxxxxx
3bzcA           DIVKVKVMEVDPRNRVGLSMRMS-----------------------------------------------
3bzkA           DIVKVKVMEVDPRNRVGLSMRMS-----------------------------------------------
2ahoB           LNIKIYTIGAP-RYRVDVVGTNP-----------------------------------------------
2ba0A           DAIIAKVLNIDPKMKVTLTMKD------------------------------------------------
2ba0B           DAIIAKVLNIDPKMKVTLTMKDR-----------------------------------------------
2cqoA           DKVWVKLIGREDRIKVSLSMKVV-----------------------------------------------
3cw2C           LNIKIYTIGAPRRVDVVGTNPKE-----------------------------------------------
2ckzB           EKIRFIEREVFVDVKPPAYALLGS----------------------------------------------
3c19A           GWVDLKEREIKVQ---------------------------------------------------------
1ah9A           DKVTVLTPYDLSKGRIVFRSR-------------------------------------------------
2a1aA           IIDETVWEGIEPSKDVLDELKNY-----------------------------------------------
1d7qA           DIILVGLRDYQNKADVILKYNAD-----------------------------------------------
2ba1A           DILKAVIGDNLRLSTKEEEMGVLRALCSNCKTEMVREGDILKCPECGR----------------------
2ckzD           EKIRFIEREVFVDVPPAYALLGS-----------------------------------------------
2c35B           KTMRLKIVGTRVKNDIFAIGSLM-----------------------------------------------
2a19A           KNDVAVVLRVDEKGYIDLSKRRV-----------------------------------------------
2e3uA           EEMSGSVSVYGKTVAIIGNPIQI-----------------------------------------------
2bh8A           ----------------------------------------------------------------------
2asbA           NRLRCYVVGVTRGAR-------------------------------------------------------
2bh8B           ----------------------------------------------------------------------


                         +         .         .         .         .         *         .:210
query           xx
3bzcA           --
3bzkA           --
2ahoB           --
2ba0A           --
2ba0B           --
2cqoA           --
3cw2C           --
2ckzB           --
3c19A           --
1ah9A           --
2a1aA           --
1d7qA           --
2ba1A           --
2ckzD           --
2c35B           --
2a19A           --
2e3uA           --
2bh8A           --
2asbA           --
2bh8B           --