[GTOP][HELP][ORGANISMS][SEARCH][SUMMARY][COMMENT/QUESTION(gtop-admin@spock.genes.nig.ac.jp)]

Result of RPS:PDB for tthe0:AAS81982.1

[Show Plain Result]

#ERROR : Can't open dsspfile "1e8cB.bssp"
#ERROR : Can't open dsspfile "2am1A.bssp"
#ERROR : Can't open dsspfile "1e8cA.bssp"
#ERROR : Can't open dsspfile "2cb4A.bssp"
#ERROR : Can't open dsspfile "3eagA.bssp"
#ERROR : Can't open dsspfile "1eehA.bssp"
#ERROR : Can't open dsspfile "2atmA.bssp"
#ERROR : Can't open dsspfile "1e0dA.bssp"

## Summary of PDB Search
:414
    7e-41  20%  1e8cB  [c.98.1 - c.72.2 - c.59.1]
    2e-38  17%  2am1A  [x.x.x] UDP-N-ACETYLMURAMOYLALANINE-D-GLUTAMYL-LYSINE-D-
    1e-35  19%  1e8cA  [c.98.1 - c.72.2 - c.59.1]
    7e-26   6%  2cb4A  [x.x.x] MOSQUITOCIDAL TOXIN
    6e-22  15%  3eagA  [x.x.x] UDP-N-ACETYLMURAMATE:L-ALANYL-GAMMA-D-GLUTAMYL-
    1e-20  16%  1eehA  [c.5.1 - c.72.2 - c.59.1]
    7e-14   7%  2atmA  [x.x.x] HYALURONOGLUCOSAMINIDASE
    2e-13  14%  1e0dA  [c.5.1 - c.72.2 - c.59.1]
:414

## Multiple Alignment
                         .         .         .         .         +         .         .:70
query           xxxxSWLYARQGRFAPGLERIRALLARLGHPEEAYPVALVGGTNGKGTTARTLAAILEEAGFRVGLYTSP
1e8cB           ----------------------------GKTTTTQLLAQWSQLLGEISAVGTVGNGLLGKVIPTENTTGS
2am1A           --------------VDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDLAHLLSTRYK------TYK
1e8cA           ----GRFYHEPSDNLR----LVGVTGTNGKTTTTQLLAQWSQLLGEISAVGTVGNGLLGKVIPTENTT--
2cb4A           ----------------------------------KDNTWIQAASLTWLDSSLLYQLISTRIPSFASPNGL
3eagA           ----------------GLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTA-SLAWVLEYAGLAPGFLIGG
1eehA           ----------------------------------------------------------------------
2atmA           ----------------------------------------------------------------------
1e0dA           ----------------------------------------------------------------------


                         .         .         *         .         .         .         .:140
query           HLVDFRERIQVQGRPIXXXXXXXXXXXXXXXXXXXXXSFFEAATALALLHFAREGVEFAVLEVGLGGRLD
1e8cB           AV-----------------------------------------DVQHELAGLVDQGATFCAEVSSHGLVQ
2am1A           TQGNYNNEIGLPY---------------------------------TVLHPEGTEKLVLEGQDHLGDIHL
1e8cA           ---------------------------------------GSAVDVQHELAGLVDQGATFCAEVSSHGLVQ
2cb4A           HRE-----------------------------------QTIDSNTGQIQIDNEHRL-LRWDRRPPNDIFL
3eagA           VPENFGVSARLPQTPR---------------------QDPNSQSPFFVIEADEY-------DTAFFDKRS
1eehA           ---------------------------------------------LPALMLLDDECELYVLELSSFQLET
2atmA           ----------------------------------------------------------------------
1e0dA           ----------------------------------------------------------------------


                         +         .         .         .         .         *         .:210
query           ATNATEPVLSVVTNVGHDHLEVLGPTLKDVAREKAGIFRGGVPALTAAQGEGLGVLRAEALARKTPLWVL
1e8cB           HRVALKFAASVFTNLSRDHLDYHGDEHYEAAWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSEDHI
2am1A           LSELARPKTAIVTLVGEAHLAFFK-DRSEIAKGKQIADGASGSLLLAPADP--IVEDYLPIDKKVVRFGQ
1e8cA           HRVALKFAASVFTNLSRDHLDYHGDEHYEAAWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSEDHI
2cb4A           NGFIPRVTNQNLSPVEDTHLLNYL------RTNSPSIFVSTTRARYNNLGLEITPWTPHSANNNIIYRYE
3eagA           KFVHYRPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRTVPSEGLIGRQQSLQDTLDKGCWTPVEKFGT
1eehA           TSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGAD-ERCVSFGVN
2atmA           ------VF-NIYWNVPTFMCHQYDLYFDEVTNFNIKRNSKDDFKIAIFYDPGEFPALLSLKDGKYKKRNG
1e0dA           ----------------------------------------------------------------------


                         .         .         .         +         .         .         .:280
query           GEDFHAEGVEALPEGLAFTLRLERTGEALRLTARLLGPHQAENXXXXXXXXXXXXXXWEAVKRGVARAEN
1e8cB           NRWLKATEVNYHDSGATIRF---SSSWGDGEIESHLGAFNVSNLLLALATLLALGYPLADLLKTAARLQP
2am1A           GAELEITDLVERKDSLTFKAN----FLEQALDLPVTGKYNATN-AIASYVALQEGVSEEQIRLAFQHLEL
1e8cA           NPNCHGRWLKAHDSGATIRF---SSSWGDGEIESHLGAFNVSNLLLALATLLALGYPLADLLKTAARLQP
2cb4A           IFGIDINASFSRNHNPFPEDQITFPGGIRPEFIRSTYEYHNGEIVRIWINPNFINPSTLNDVSGPSNISK
3eagA           EHGWQAGEAN---ADGSFDV---LLDGKTAGRVKWDLGRHNRNALAVIAAARHVGVDIQTACEALGAFKN
1eehA           MGDYHLTWLRVKGEKVLNVKEM-----------KLSGQHNYTNALAALALADAAGLPRASSLKALTTFTG
2atmA           GVIENLDKIYPNRNFSGIGV-IDFERWRPIFRQNWGNMKIHKNFSIDLVRNEHPTWNKKIELEASKRFEK
1e0dA           ------------------------------------GQHNYTNALAALALADAAGLPRASSLKALTTFTG


                         .         *         .         .         .         .         +:350
query           PGRLQRLLWRGRELLLDGAHNPEGALALREALRFHGLLPAAFVLGFSRDKDHAAMAEALRGLGPVVLTRY
1e8cB           CGREVFTAPGKPTVVVDYAHTPDALEKALQAARCAGKLWCVFGCGGDRDKGKRPLGAIAEEFADVAVVTD
2am1A           RNRTEWKAANGADILSDVYNANPTAKLILETFSAIPAVLADKELGDQSVQLHNQILSLSPDVLDIVIFQL
1e8cA           CGREVFTAPGKPTVVVDYAHTPDALEKALQAARCAGKLWCVFGCGGDRDKGKRPLGAIAEEFADVAVVTD
2cb4A           FWHENHS----EGNNDSYNQDFDFAPN-------------------------------------------
3eagA           VKR-------------------------------------------------------------------
1eehA           PHRFEVVEHNGVRWINDSKANVGSTEAALNGLHVDGTL-HLLLGGDGKSADFSPLARYLNGDNVRLYC--
2atmA           ARFFMEEDWGYYGYPYCFNMSPNNLVPECDVTAMHENDKMSWLFNNQNVLLPSVYVRQELTPDQRIGLKE
1e0dA           PHRFEVVLEHNGVRWDSKATNVGSTEAALNGLHVDGTL-HLLLGGDGKSADFSPLARYLNGDNVRLYC--


                         .         .         .         .         *         .         .:420
query           ASLRSEDPRALLPLFPGAKVVEDPLEALEEAFSREGRVVVAGSLYLVGEVLRRLExxxxxxxxx
1e8cB           DNPRTEEPRAIIGLDAGHAKVEGRAEAVTCAVQKENVVLVAGKGHEDYQIVGNQ----------
2am1A           AQLASQFPIGHVYYFKKTEDQDQFEDLVKQVKESHDQILLKGSNSNLAKLVESLE---------
1e8cA           DNPRTEEPRAIIGLDAGHAKVEGRAEAVTCAVQKENVVLVAGKGHEDYQIVG------------
2cb4A           ----------------------------------------------------------------
3eagA           ----------------------------------------------------------------
1eehA           --FGRDGAQLAALRPEVAEQTETMEQAMRLLAPRGDMVLLSPACASLDQFKNFEQ---------
2atmA           AVRISNNLKHSPKVLSYWWYV-------------------------------------------
1e0dA           --FGRDGAQLAALRPEVAEQTETMEQAMRLLAPQPGDVLLSPACASLDQFKNFEQ---------