RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= AAK88391.2 atum0 AAK88391.2 GIB00072CH01 "RhtB family
transporter"
         (215 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF01810 LysE "LysE type translocator"                                  85   7e-20

>PF01810 LysE "LysE type translocator"
          Length = 190

 Score = 85.4 bits (211), Expect = 7e-20
 Identities = 56/121 (46%), Positives = 73/121 (60%), Gaps = 2/121 (1%)

Query: 24  PGPDMTLWISRSLREGRAAGFMTLVGTNIGITVHTMLVAFGVAALIVASPTAFMILKTGG 83
           PGPD  L +S+ LR GR AG  T +G  +G  V  +L A G+ AL+ ASP  F +LK  G
Sbjct: 7   PGPDNALVLSQGLRRGRRAGLATALGIALGDLVLILLAALGLGALLAASPWLFTVLKLAG 66

Query: 84  AAYLVWLAIQAIRKGSDFVMVKSTGEKAQASLKSALLNGIWVNLLNPKVIIFFMTFLPQF 143
           AAYL++L I+A+R         +      ASL+ + L G  VNLLNPK I+FF+  LPQF
Sbjct: 67  AAYLLYLGIKALRSAP--APAAAAAAAPPASLRRSFLQGFLVNLLNPKAILFFLALLPQF 124

Query: 144 V 144
           V
Sbjct: 125 V 125


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.322    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 17,027,498
Number of extensions: 979007
Number of successful extensions: 133930
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 2561
Number of HSP's successfully gapped: 220
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)