hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /home/genome/SCOP/1.73/Scop1.73.bin
Sequence file:            /home/genome/FASTA/gib_8340.fasta
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Query sequence: BAF55431.1
Accession:      [none]
Description:    cglu2 BAF55431.1 GIB00498CH01 "hypothetical protein"

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
0040877  ClpS-like                                       70.5    5.8e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
0040877    1/1      19    97 ..     1    87 []    70.5  5.8e-20

Alignments of top-scoring domains:
0040877: domain 1 of 1, from 19 to 97: score 70.5, E = 5.8e-20
                   *->eklkepplykviLlNDdvttmefVvevLqkvfglslekAtelmlevh
                          e+ ++ +i+++D+v+ m++V++v+q+v+g+s ++Atelm++vh
  BAF55431.1    19    TLSSENLPWLCIVWDDPVNLMSYVTYVFQTVLGFSKKRATELMMQVH 65   

                   teGravvgvgtleiaetkveqlldlgltaeipllltleee