RPS-BLAST 2.2.16 [Mar-25-2007]

Database: 95pdb09Oct16_0000; 95pdb09Oct16_0001; 95pdb09Oct16_0002;
95pdb09Oct16_0003 
           66,450 sequences; 15,983,541 total letters

Searching..................................................done

Query= CIRT_02192 cimm2 CIRG_02189 Broad_Institute ""
         (682 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3c3lB [x.x.x] VIRION RNA POLYMERASE                                    35   5e-04

>3c3lB [x.x.x] VIRION RNA POLYMERASE
          Length = 1085

 Score = 35.5 bits (80), Expect = 5e-04
 Identities = 11/169 (6%), Positives = 29/169 (17%), Gaps = 2/169 (1%)

Query: 166 FFLHDKRSSN--SPNGYRTANNKLKSKPHGLIVDSNVRRPPPKPDITDGPWTHDLHESVN 223
             + +    N  +   Y           +               +            +  
Sbjct: 247 VDMSEIDPDNKKTIGLYTITELDSFDPINSFPTAIEEAVLVNPTEKMFFGDDIPPVANTQ 306

Query: 224 EGPPPASSRPSSTLPSNMPSGQSSKPVPTAPRSTPPNRSFSSTVLIGNVPVVVFLPGMAN 283
              P   + P                     +            L+G   +   L    +
Sbjct: 307 LRNPAVRNTPEQKAALKAEQATEFYVHTPMVQFYETLGKDRILELMGAGTLNKELLNDNH 366

Query: 284 PIPYSAVPKKQHTRLPQHRPPLRRDKPVRIALPGSPPRYIFPSTERSFI 332
                   +       Q    + + +     +   P  Y +  T    +
Sbjct: 367 AKSLEGKNRSVEDSYNQLFSVIEQVRAQSEDISTVPIHYAYNMTRVGRM 415


  Database: 95pdb09Oct16_0000
    Posted date:  Oct 27, 2009  4:27 PM
  Number of letters in database: 15,983,541
  Number of sequences in database:  66,450
  
Lambda     K      H
   0.320    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 66450
Number of Hits to DB: 35,821,707
Number of extensions: 2238013
Number of successful extensions: 28014
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 13020
Number of HSP's successfully gapped: 764
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)