RPS-BLAST 2.2.16 [Mar-25-2007]

Database: 40scop73nmM 
           9549 sequences; 1,678,726 total letters

Searching..................................................done

Query= CIRT_01687 cimm2 CIRG_01684 Broad_Institute ""
         (385 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1f37A [c.47.1.11] FERREDOXIN [2FE-2S]                                  45   2e-07

>1f37A [c.47.1.11] FERREDOXIN [2FE-2S]
          Length = 109

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 42/141 (29%)

Query: 247 ILLCSQKT----RDARCGQS-APLLRREFERHLRPLGLYRDLHDERPGGVGIYFISHVGG 301
           + +C Q          C Q  +  + + F   ++                 I     +  
Sbjct: 6   VFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQ-------LFMTTVITPTGCMNA 58

Query: 302 HKYSANVIVYRRRNFEWFKEGKDDCSNNVESMEKEGASQGIWLARVRPEDCEGIVKFTVL 361
                 V+VY                             G+W  +V+PED + IV+  + 
Sbjct: 59  CMMGPVVVVY---------------------------PDGVWYGQVKPEDVDEIVEKHLK 91

Query: 362 QGKVVKPGLQLRGGFDREKGL 382
            G+ V+   +L     +  G+
Sbjct: 92  GGEPVE---RLVISKGKPPGM 109


  Database: 40scop73nmM
    Posted date:  Nov 2, 2009 11:39 AM
  Number of letters in database: 1,678,726
  Number of sequences in database:  9549
  
Lambda     K      H
   0.311    0.126    0.331 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9549
Number of Hits to DB: 22,063,515
Number of extensions: 1567852
Number of successful extensions: 7348
Number of sequences better than 1.0e-03: 8
Number of HSP's gapped: 6370
Number of HSP's successfully gapped: 710
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)