BLASTP 2.2.16 [Mar-25-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB81560.1 cper0 CPE1854 GIB00075CH01 "conserved hypothetical
protein"
(219 letters)
Database: 95pdb09Oct16x
66,450 sequences; 15,983,541 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
1w8gA [x.x.x] HYPOTHETICAL UPF0001 PROTEIN YGGS 100 7e-24
1b54A [x.x.x] YEAST HYPOTHETICAL PROTEIN 88 3e-20
1ct5A [c.1.6] PROTEIN (YEAST HYPOTHETICAL PROTEIN, SELENOMET) 76 1e-16
3cpgA [x.x.x] UNCHARACTERIZED PROTEIN 64 3e-13
>1w8gA [x.x.x] HYPOTHETICAL UPF0001 PROTEIN YGGS
Length = 226
Score = 99.8 bits (247), Expect = 7e-24
Identities = 83/227 (36%), Positives = 111/227 (48%), Gaps = 16/227 (7%)
Query: 2 DIKENLTKFTEKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEI 51
DI NL + +KI P + L+AVSKT+ + EA + G R+FGEN VQE
Sbjct: 1 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 60
Query: 52 IRKFDEFHQ----DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKI 107
+ K F + +EWH IG LQ+NK + + + ++D +++ +
Sbjct: 61 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 120
Query: 108 ANTLIQVNIGREEQKYGXXXXXXXXXXXXXXXCNNVNVLGIMTIIPKGTEEECRKYFSKT 167
N LIQ+NI E K G + + G+M I E E + F
Sbjct: 121 LNVLIQINISDENSKSGIQXXXXXXXXXXXXXXPRLRLRGLMAI--PAPESEYVRQFEVA 178
Query: 168 HXXXXXXXXXXXXNIKMDILSMGMSGDYEIATEEGSNMVRIGQGIFG 214
+D LS+GMS D E A GS MVRIG IFG
Sbjct: 179 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFG 225
>1b54A [x.x.x] YEAST HYPOTHETICAL PROTEIN
Length = 230
Score = 87.8 bits (216), Expect = 3e-20
Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 31 EMEEAYEFGIRKFGENKVQEIIRKFDEFHQDVEWHLIGHLQTNKVKYI--VDKVHLIQSL 88
+++ Y+ G+R+FGEN VQE+I K D++WH IG LQTNK K + V ++ ++++
Sbjct: 47 DIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETI 106
Query: 89 DSIKLLKEIEKVYGKHNKIANTL---IQVNIGREEQKYG---XXXXXXXXXXXXXXXCNN 142
DS+K K++ + K N + +Q+N E+QK G C
Sbjct: 107 DSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKY 166
Query: 143 VNVLGIMTIIPKGTEEECRKYFSKTHXXXXXXXXXXXXNIKMDILSMGMSGDYEIATEEG 202
+ + G+MTI G+ E + F+ ++K LSMGMS D+ A +G
Sbjct: 167 IKLNGLMTI---GSWE--NRDFATLVEWKKKIDAKFGTSLK---LSMGMSADFREAIRQG 218
Query: 203 SNMVRIGQGIFG 214
+ VRIG IFG
Sbjct: 219 TAEVRIGTDIFG 230
>1ct5A [c.1.6] PROTEIN (YEAST HYPOTHETICAL PROTEIN, SELENOMET)
Length = 225
Score = 75.9 bits (185), Expect = 1e-16
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 34/199 (17%)
Query: 31 EMEEAYEFGIRKFGENKVQEIIRKFDEFHQDVEWHLIGHLQTNKVKYI--VDKVHLIQSL 88
+++ Y+ G+R+FGEN VQE+I K D++WH IG LQTNK K + V ++ ++++
Sbjct: 46 DIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETI 105
Query: 89 DSIKLLKEIEKVYGKHNKIANTL---IQVNIGREEQKYGXXXXXXXXXXXXXXXCNNVNV 145
DS+K K++ + K N + +Q+N E+QK G N
Sbjct: 106 DSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLN-----------------NE 148
Query: 146 LGIMTIIPKGTEEECRKYFSKTHXXXXXXXXXXXXNI-----KMDI-----LSMGMSGDY 195
I +I EEC+ + K + + K+D L + S D+
Sbjct: 149 AEIFEVIDFFLSEECK--YIKLNGLTIGSWNRDFATLVEWKKKIDAKFGTSLKLSGSADF 206
Query: 196 EIATEEGSNMVRIGQGIFG 214
A +G+ VRIG IFG
Sbjct: 207 REAIRQGTAEVRIGTDIFG 225
>3cpgA [x.x.x] UNCHARACTERIZED PROTEIN
Length = 247
Score = 64.3 bits (155), Expect = 3e-13
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 25/215 (11%)
Query: 17 NVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFH---------------QD 61
+V+L+A +KTR I E+ A + G+R GEN+ QE+ K + +
Sbjct: 40 SVRLLAATKTRDIGEIA-AIDAGVR-IGENRPQEVTAKAEGLARRCAERGFSLGVAAAEH 97
Query: 62 VEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIANTLIQVNIGREEQ 121
+ +HLIG LQ+NK+ ++ V I+S+DSI L ++I + L++VN EE
Sbjct: 98 IPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEVNESGEES 157
Query: 122 KYGXXXXXXXXXXXXXXXCNNVNVLGIMTIIPKGTEEECRKYFS---KTHXXXXXXXXXX 178
K G + + + G+ E R+ FS KT
Sbjct: 158 KSGCDPAHAIRIAQKIGTLDGIELQGLTIGAHVHDETVIRRGFSHLRKTRDLILASGEPG 217
Query: 179 XXNIKMDILSMGMSGDYEIATEEGSNMVRIGQGIF 213
+ + +GD E+A EGS +VR+G IF
Sbjct: 218 TDRCR----ELSGTGD-ELAIAEGSTIVRVGTAIF 247
Database: 95pdb09Oct16x
Posted date: Nov 2, 2009 3:15 PM
Number of letters in database: 15,983,541
Number of sequences in database: 66,450
Lambda K H
0.315 0.136 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 66450
Number of Hits to DB: 857,086,052
Number of extensions: 36395906
Number of successful extensions: 94750
Number of sequences better than 1.0e-03: 1300
Number of HSP's gapped: 93921
Number of HSP's successfully gapped: 1457
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)