RPS-BLAST 2.2.16 [Mar-25-2007]

Database: 40scop73nmM 
           9549 sequences; 1,678,726 total letters

Searching..................................................done

Query= BAB80033.1 cper0 lacB GIB00075CH01 "galactose-6-phosphate
isomerase"
         (171 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1nn4A [c.121.1.1] RIBOSE 5-PHOSPHATE ISOMERASE B                       94   2e-22
1uslA [c.121.1.1] RIBOSE 5-PHOSPHATE ISOMERASE B                       93   5e-22
1ybfA [c.56.2.1] AMP NUCLEOSIDASE                                      32   9e-04

>1nn4A [c.121.1.1] RIBOSE 5-PHOSPHATE ISOMERASE B
          Length = 159

 Score = 93.8 bits (233), Expect = 2e-22
 Identities = 50/126 (39%), Positives = 75/126 (59%)

Query: 1   MKIAIGCDHIVTDTKIAVSDFLKAKGYDVLDVGTYDFTRTHYPIFGKKVGEAVASGEADL 60
            KIA GCDH+    K  +   L  +G +V+D GT+   RT YP +  +V  AVA GE D 
Sbjct: 15  KKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG 74

Query: 61  GVCICGTGVGINNAVNKVPGIRSALVRDMTTAIYAKEQLNANVIGFGGKITGEFLMCDII 120
           G+ ICGTGVGI+ A NK  GIR+ +  +  +A  +++  + NV+ FG ++ G  L   I+
Sbjct: 75  GILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMIV 134

Query: 121 EAFIKA 126
           +A++ A
Sbjct: 135 DAWLGA 140


>1uslA [c.121.1.1] RIBOSE 5-PHOSPHATE ISOMERASE B
          Length = 156

 Score = 92.7 bits (230), Expect = 5e-22
 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 1/129 (0%)

Query: 1   MKIAIGCDHIVTDTKIAVSDFLKAKGYDVLDVGTY-DFTRTHYPIFGKKVGEAVASGEAD 59
           M++ +G DH   + K  + + LK  G++ +D G         YP F         +    
Sbjct: 2   MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS 61

Query: 60  LGVCICGTGVGINNAVNKVPGIRSALVRDMTTAIYAKEQLNANVIGFGGKITGEFLMCDI 119
           LG+ + G+G G   A NKVPG R AL   + TA  A+E  NA +IG GG++        I
Sbjct: 62  LGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAI 121

Query: 120 IEAFIKADY 128
           ++AF+   +
Sbjct: 122 VDAFVTTPW 130


>1ybfA [c.56.2.1] AMP NUCLEOSIDASE
          Length = 240

 Score = 32.0 bits (73), Expect = 9e-04
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 15/76 (19%)

Query: 12 TDTKIAVSDFLKAKGYDVLDVGTYD-FTRTHY-----------PIFGKKVGEAVASGEAD 59
          T  +I  +   +     ++D   Y   T   +           PI G+      AS E  
Sbjct: 1  TKQEIVENWLPRYTQRQLIDFEPYILLTNFSHYLHVFAEHYGVPIVGEHTSXPNASAE-- 58

Query: 60 LGVCICGTGVGINNAV 75
           GV +   G G  NA 
Sbjct: 59 -GVTLINFGXGSANAA 73


  Database: 40scop73nmM
    Posted date:  Nov 2, 2009 11:39 AM
  Number of letters in database: 1,678,726
  Number of sequences in database:  9549
  
Lambda     K      H
   0.315    0.132    0.351 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9549
Number of Hits to DB: 14,669,960
Number of extensions: 1033303
Number of successful extensions: 4237
Number of sequences better than 1.0e-03: 8
Number of HSP's gapped: 3900
Number of HSP's successfully gapped: 201
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)