RPS-BLAST 2.2.16 [Mar-25-2007]
Database: 40scop73nmM
9549 sequences; 1,678,726 total letters
Searching..................................................done
Query= BAB81914.1 cper0 ctrA GIB00075CH01 "CTP synthase"
(535 letters)
Score E
Sequences producing significant alignments: (bits) Value
1s1mA1 [c.23.16.1] CTP SYNTHASE A:287 -- 544 370 e-105
1s1mA2 [c.37.1.10] CTP SYNTHASE A:1 -- 266 288 1e-80
1j5sA [c.1.9.8] URONATE ISOMERASE 225 9e-62
1fp4B [c.92.2.3] NITROGENASE MOLYBDENUM-IRON PROTEIN BETA CHAIN 166 5e-44
2oynA1 [b.43.5.2] HYPOTHETICAL PROTEIN MJ0056 A:1 -- 136 130 4e-33
1t3tA2 [c.23.16.1] PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE A:... 121 2e-30
1l9xA [c.23.16.1] GAMMA-GLUTAMYL HYDROLASE 119 9e-30
1fy2A [c.23.16.4] ASPARTYL DIPEPTIDASE 113 4e-28
1i1qB [c.23.16.1] ANTHRANILATE SYNTHASE COMPONENT II 110 4e-27
1wl8A1 [c.23.16.1] GMP SYNTHASE [GLUTAMINE-HYDROLYZING] SUBUNIT ... 107 4e-26
1gpmA2 [c.23.16.1] GMP SYNTHETASE A:3 -- 207 106 8e-26
1aa7A [a.95.1.1] INFLUENZA VIRUS MATRIX PROTEIN 100 4e-24
1gpwB [c.23.16.1] AMIDOTRANSFERASE HISH 100 4e-24
1o1yA [c.23.16.1] CONSERVED HYPOTHETICAL PROTEIN TM1158 97 4e-23
1q7rA [c.23.16.1] PREDICTED AMIDOTRANSFERASE 96 7e-23
1qdlB [c.23.16.1] PROTEIN (ANTHRANILATE SYNTHASE (TRPG-SUBUNIT)) 93 6e-22
1jvnA2 [c.23.16.1] BIFUNCTIONAL HISTIDINE BIOSYNTHESIS PROTEIN A... 87 3e-20
1ei5A2 [b.61.3.1] D-AMINOPEPTIDASE A:418 -- 520 83 8e-19
1ka9H [c.23.16.1] IMIDAZOLE GLYCEROL PHOSPHTATE SYNTHASE 75 2e-16
2ghrA1 [c.23.16.8] HOMOSERINE O-SUCCINYLTRANSFERASE A:17 -- 297 71 3e-15
1sy7A1 [c.23.16.3] CATALASE 1 A:553 -- 736 70 5e-15
1j42A [c.23.16.2] RNA-BINDING PROTEIN REGULATORY SUBUNIT 68 3e-14
1a9xB2 [c.23.16.1] CARBAMOYL PHOSPHATE SYNTHETASE (SMALL CHAIN) ... 50 5e-09
1suwA [e.52.1.1] PROBABLE INORGANIC POLYPHOSPHATE/ATP-NAD KINASE 43 8e-07
1q32A2 [d.136.1.3] TYROSYL-DNA PHOSPHODIESTERASE A:302 -- 538 36 1e-04
2fexA1 [c.23.16.2] CONSERVED HYPOTHETICAL PROTEIN A:1 -- 188 35 2e-04
1g8mA2 [c.97.1.4] AICAR TRANSFORMYLASE-IMP CYCLOHYDROLASE A:201 ... 34 4e-04
1g2iA [c.23.16.2] PROTEASE I 33 0.001
>1s1mA1 [c.23.16.1] CTP SYNTHASE A:287 -- 544
Length = 248
Score = 370 bits (951), Expect = e-105
Identities = 126/241 (52%), Positives = 165/241 (68%), Gaps = 1/241 (0%)
Query: 295 KIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLSGVDGVLV 354
I +VGKY+EL DAY SV+EAL HGGL N +V I+ I+++DV V E+L G+D +LV
Sbjct: 5 TIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGV-EILKGLDAILV 63
Query: 355 PGGFGDRGVEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVLGLEGAHSSELNPETP 414
PGGFG RGVEG I R+AREN P+LGICLGMQ A+I+YAR+V +E A+S+E P+
Sbjct: 64 PGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCK 123
Query: 415 FPVIDLMPEQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASDLIYERHRHRYEFNNEYRT 474
+PV+ L+ E +D TMRLG C+L D++ + +Y + I ERHRHRYE NN
Sbjct: 124 YPVVALITEWRDENGNVETMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLK 183
Query: 475 QLIESGLTIAGTSPDGRLVECVEVKDHPWFVAVQYHPELKSRPNRPHPLFVGFVGAALNN 534
Q+ ++GL +AG S D +LVE +EV +HPWFVA Q+HPE S P HPLF GFV AA
Sbjct: 184 QIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEF 243
Query: 535 K 535
+
Sbjct: 244 Q 244
>1s1mA2 [c.37.1.10] CTP SYNTHASE A:1 -- 266
Length = 266
Score = 288 bits (737), Expect = 1e-80
Identities = 153/266 (57%), Positives = 198/266 (74%), Gaps = 2/266 (0%)
Query: 5 TKYVFVTGGVVSSLGKGITAASLGRLLKNRGLSVSIQKFDPYLNIDPGTMSPYQHGEVFV 64
T Y+FVTGGVVSSLGKGI AASL +L+ RGL+V+I K DPY+N+DPGTMSP QHGEVFV
Sbjct: 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFV 62
Query: 65 TDDGAETDLDLGHYERFIDENLTQNSNVTSGRVYWSVISKERKGEYLGGTVQVIPHITNA 124
T+DGAETDLDLGHYERFI +++ +N T+GR+Y V+ KER+G+YLG TVQVIPHITNA
Sbjct: 63 TEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNA 122
Query: 125 IKDRVHRVGKERDXXXXXXXXXXXXXXXXSLPFLEAIRQIKYDVGKENVCFIHVTLVPYL 184
IK+RV G+ D SLPFLEAIRQ+ ++G+E+ F+H+TLVPY+
Sbjct: 123 IKERVLEGGEGHD--VVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYM 180
Query: 185 GKAGELKTKPTQHSVKELRSIGIQPDIIVCRSEKELSEDIKKKIGLFCNIDASEVIQNLD 244
+GE+KTKPTQHSVKEL SIGIQPDI++CRS++ + + + KI LFCN+ VI D
Sbjct: 181 AASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKD 240
Query: 245 AEHLYAVPLMLHKEGLDRLVCEKLGL 270
+ +Y +P +L +GLD +C++ L
Sbjct: 241 VDSIYKIPGLLKSQGLDDYICKRFSL 266
>1j5sA [c.1.9.8] URONATE ISOMERASE
Length = 451
Score = 225 bits (574), Expect = 9e-62
Identities = 38/397 (9%), Positives = 80/397 (20%), Gaps = 37/397 (9%)
Query: 161 IRQIKYDVGKENVCFIHVTLVPYLGKAGELKTKPTQHSVKELRSIGIQ----PDIIVCRS 216
+ +I + K P I + +I S
Sbjct: 58 YVWELMRRCGVSEEYITGSRSNKEKWLALAKVFPRFVGNPTYEWIHLDLWRRFNIKKVIS 117
Query: 217 EK---ELSEDIKKK------IGLFCNIDASEVIQNLDAEHLYAVPLMLHKEGLDRLVCEK 267
E+ E+ E+ KKK L ++ + D + +
Sbjct: 118 EETAEEIWEETKKKLPEMTPQKLLRDMKVEILCTTDDPVSTLEHHRKAKEAVEGVTILPT 177
Query: 268 LGL-GCRDIDNAEWIDMVHRITHLTHTTKIALVGKYVELHDAYISVVEALNHGGLSNDTN 326
++D W + V ++ +A E G ++
Sbjct: 178 WRPDRAMNVDKEGWREYVEKMGERY----GEDTSTLDGFLNALWKSHEHFKEHGC-VASD 232
Query: 327 VEIEWINAEDVTKENVDELLSGVDGVLVPGGFGDRGVEGKIE---AIRWARENKKPFLGI 383
+ + V + + + + N L I
Sbjct: 233 HALLEPSVYYVDENRARAVHEKAFSGEKLTQDEINDYKAFMMVQFGKMNQETNWVTQLHI 292
Query: 384 CLGMQCAVIEYARNVLGLEGAHSSELNPETPFPVIDLMPEQKDVEDLGGTM------RLG 437
+ G S + + E + +
Sbjct: 293 GALRDYRDSLFKTLGPDS-GGDISTNFLRIAEGLRYFLNEFDGKLKIVLYVLDPTHLPTI 351
Query: 438 LYPCKLEDNTFCKDVYASDLIYERHRHRYEFNNEYRTQLIESGLTIAGTSPDGRLVECVE 497
+ N + + + E + +Y + G D R +
Sbjct: 352 STIARAFPNVY----VGAPWWFNDSPFGMEMHLKYLASVDLLYNLA-GMVTDSRKLL-SF 405
Query: 498 VKDHPWF--VAVQYHPELKSRPNRPHPLFVGFVGAAL 532
F V E+ + P V
Sbjct: 406 GSRTEMFRRVLSNVVGEMVEKGQIPIKEARELVKHVS 442
>1fp4B [c.92.2.3] NITROGENASE MOLYBDENUM-IRON PROTEIN BETA CHAIN
Length = 522
Score = 166 bits (421), Expect = 5e-44
Identities = 41/457 (8%), Positives = 104/457 (22%), Gaps = 48/457 (10%)
Query: 19 GKGITAASLGRLLKNRGLSVSIQKFDPYLNIDPGTMSPYQHGEVFVTDDGAETDLDLGHY 78
A L L + + ++ V+D E G
Sbjct: 68 ACQPLGAVLCALGFEKTMPYVHGSQGCVAYFRSYFNRHFREPVSCVSDSMTEDAAVFGGQ 127
Query: 79 ERFIDENLTQ--------------NSNVTSGRVYWSVISKERKGEYLGGTVQVIPHITNA 124
+ D G + I+ +K ++ V T +
Sbjct: 128 QNMKDGLQNCKATYKPDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPS 187
Query: 125 IKDRVHRV---------------GKERDXXXXXXXXXXXXXXXXSLPFLEAIRQIKYDVG 169
+ L I+++ ++G
Sbjct: 188 FVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMG 247
Query: 170 KENVCFIHVTLVPYLGKAGELKTKPTQHSVKELRSIGIQPDII-VCRSEKELSEDIKKKI 228
V G+ + + +E++ + + + E ++ +
Sbjct: 248 VGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEGT 307
Query: 229 GLFCNIDASEVIQNLDAEHLYAVPLMLHKEGLDRLVCEKLGLGCRDIDNAEWIDMVHRIT 288
+ + + + + + + ++ G + + +H
Sbjct: 308 WKHEVPKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMT--DSHTWLHGKR 365
Query: 289 HLTHTTKIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWINA----------EDVT 338
++G L + V L H G + A
Sbjct: 366 FALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKD 425
Query: 339 KENVDELLSGVDGVLVPGGFGDRGVEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNV 398
++ L+ + G + ++ +E + P + I + +
Sbjct: 426 LWHLRSLVFTDKPDFMIGNSYGKFIQRDTLH--KGKEFEVPLIRIGFPIFDRHHLHRSTT 483
Query: 399 LGLEGAHSSELNPETPFPVIDLMPEQKDVEDLGGTMR 435
LG EGA +++ + E+ T
Sbjct: 484 LGYEGAMQILTTLVN--SILERLDEETRGM--QATDY 516
>2oynA1 [b.43.5.2] HYPOTHETICAL PROTEIN MJ0056 A:1 -- 136
Length = 136
Score = 130 bits (328), Expect = 4e-33
Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 22/134 (16%)
Query: 5 TKYVFVTGGVVSSLGKGITAASLGRLLKNRGLSVSIQKFDPY---LNIDPGTMSPYQ--- 58
K + + G VVS LG+G SL + + I F+PY LN+
Sbjct: 2 VKLMIIEGEVVSGLGEGRYFLSLPPY---KEIFKKILGFEPYEGTLNLKLDREFDINKFK 58
Query: 59 --HGEVFVTDDGAETDLDLGHYERFIDENLTQNSNVTSGRVYWSVISKERKGEYLGGTVQ 116
E F + + + L + + ++ +++ ++ + ++
Sbjct: 59 YIETEDFEFNGKRFFGVKV----------LPIKILIGNKKIDGAIVVPKKTY-HSSEIIE 107
Query: 117 VIPHITNAIKDRVH 130
+I + + +
Sbjct: 108 IIAPMKLREQFNLK 121
>1t3tA2 [c.23.16.1] PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
A:1034 -- 1295
Length = 262
Score = 121 bits (303), Expect = 2e-30
Identities = 27/256 (10%), Positives = 61/256 (23%), Gaps = 26/256 (10%)
Query: 291 THTTKIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLSGVD 350
K+A++ + ++++ + A + G + ++ D+ L
Sbjct: 4 GARPKVAVLREQGV--NSHVEMAAAFHRAG------FDAIDVHMSDLLGG--RIGLGNFH 53
Query: 351 GVLVPGGFGDRGVEGKIEA---------------IRWARENKKPFLGICLGMQCAVIEYA 395
++ GGF V G E + + LG+ G Q
Sbjct: 54 ALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVXNGCQMMSNLRE 113
Query: 396 RNVLGLEGAHSSELNPETPFPVIDLMPEQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYAS 455
+ + L+ + L M P + +V
Sbjct: 114 LIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVRDD 173
Query: 456 DLIYERHRHRYEFNNEYRTQLIESGLTIAGTSPDGRLVECVEVKDHPWFVAVQYHPELKS 515
+ + A + + V ++ + HPE
Sbjct: 174 AHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVT-IMMPHPERVF 232
Query: 516 RPNRPHPLFVGFVGAA 531
R + +
Sbjct: 233 RTVANSWHPENWGEDS 248
>1l9xA [c.23.16.1] GAMMA-GLUTAMYL HYDROLASE
Length = 288
Score = 119 bits (298), Expect = 9e-30
Identities = 42/256 (16%), Positives = 79/256 (30%), Gaps = 37/256 (14%)
Query: 286 RITHLTHTTKIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDEL 345
I L + ++ Y + A S V+ L G V + D+T+++ + L
Sbjct: 5 IIGILMQKCRNKVMKNYGRYYIAA-SYVKYLESAGA----RVVPVRL---DLTEKDYEIL 56
Query: 346 LSGVDGVLVPGGFGD---------RGVEGKIEAIRWARENKKPFLGICLGMQCAVIEYAR 396
++G+L PGG D + + + + P G CLG + + +
Sbjct: 57 FKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISG 116
Query: 397 NVLGLEGAHSSELNPETPFPVIDLMPEQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASD 456
V MP L M + +
Sbjct: 117 EC-----------LLTATDTVDVAMPLNFTGGQLHSRM------FQNFPTELLLSLAVEP 159
Query: 457 LIYERHRHRYEFNNEYRTQLIESGLTIAGTSPDGRL--VECVEVKDHPWFVAVQYHPELK 514
L H+ N + ++ + T+ DG++ + +E +P + VQ+HPE
Sbjct: 160 LTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVY-GVQWHPEKA 218
Query: 515 SRPNRPHPLFVGFVGA 530
+ A
Sbjct: 219 PYEWKNLDGISHAPNA 234
>1fy2A [c.23.16.4] ASPARTYL DIPEPTIDASE
Length = 220
Score = 113 bits (284), Expect = 4e-28
Identities = 26/264 (9%), Positives = 54/264 (20%), Gaps = 56/264 (21%)
Query: 266 EKLGLGCRDIDNAEWID-----MVHRITHLTHTTKIALVGKYVELHDAYISVVEALNHGG 320
E L L + W++ + +++ I G + E L G
Sbjct: 2 ELLLLSNSTLPGKAWLEHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLG 61
Query: 321 LSNDTNVEIEWINAEDVTKENVDELLSGVDGVLVPGGFGDRGVE-----GKIEAIRWARE 375
+ NV A+ + + ++V GG + ++ G + + +
Sbjct: 62 V----NVTGIHRVADP------LAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVK 111
Query: 376 NKKPFLGICLGMQCAVIEYARNVLGLEGAHSSELNPETPFPVIDLMPEQKDVEDLGGTMR 435
++G G A + + F +DL P
Sbjct: 112 RGALYIGWSAGANLACPTIR-------TTNDMPIVDPNGFDALDLFP------------- 151
Query: 436 LGLYPCKLEDNTFCKDVYASDLIYERHRHRYEFNNEYRTQLIESGLTIAGTSPDGRLVEC 495
+ L+
Sbjct: 152 ---LQINPHFTNTREQRIRELLVVAPELTVIGLPE------------GNWIQVSNGQAVL 196
Query: 496 VEVKDHPWFVAVQYHPELKSRPNR 519
F +R
Sbjct: 197 GGPNTTWVF-KAGEEAVALEAGHR 219
>1i1qB [c.23.16.1] ANTHRANILATE SYNTHASE COMPONENT II
Length = 186
Score = 110 bits (275), Expect = 4e-27
Identities = 34/229 (14%), Positives = 54/229 (23%), Gaps = 48/229 (20%)
Query: 303 VELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLSGVDGVLVPGGFGDRG 362
+ L D S L +N NV I + T + +++ G G
Sbjct: 3 ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLID-RLATMKNPVLMLSPGPGVPS 61
Query: 363 VEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVLGLEGAHSSELNPETPFPVIDLMP 422
G + + K P +GICLG Q V Y V + ++ + + L
Sbjct: 62 EAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQILHGKATSIEHDGQAMFAGLAN 121
Query: 423 EQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASDLIYERHRHRYEFNNEYRTQLIESGLT 482
+ H +G
Sbjct: 122 P----------------------------------LPVARYHSSNVPAGLTINAHFNG-- 145
Query: 483 IAGTSPDGRLVECVEVKDHPWFVAVQYHPELKSRPNRPHPLFVGFVGAA 531
+V V Q+HPE L + A
Sbjct: 146 ---------MVMAVRHDADRVC-GFQFHPESILTTQG-ARLLEQTLAWA 183
>1wl8A1 [c.23.16.1] GMP SYNTHASE [GLUTAMINE-HYDROLYZING] SUBUNIT A
A:1 -- 188
Length = 187
Score = 107 bits (267), Expect = 4e-26
Identities = 31/229 (13%), Positives = 59/229 (25%), Gaps = 46/229 (20%)
Query: 303 VELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLSGVDGVLVPGGFGDRG 362
+ + D V + +I + ++ G++ GG
Sbjct: 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMN-----PKGIIFSGGPSLEN 57
Query: 363 VEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVLGLEGAHSSELNPETPFPVIDLMP 422
+ + E P LGICLG Q + V
Sbjct: 58 TGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKV------------------------ 93
Query: 423 EQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASDLIYERHRHRYEFNNEYRTQLIESGLT 482
G L ++ D K + ++E H + L
Sbjct: 94 ------GRGEKAEYSLVEIEIIDEEIFKGLPKRLKVWESHMDEVKELPPKFKIL------ 141
Query: 483 IAGTSPDGRLVECVEVKDHPWFVAVQYHPELKSRPNRPHPLFVGFVGAA 531
+ +E ++ ++ P + VQ+HPE+ + F
Sbjct: 142 ---ARSETXPIEAMKHEELPIY-GVQFHPEVAHTEKG-EEILRNFAKLC 185
>1gpmA2 [c.23.16.1] GMP SYNTHETASE A:3 -- 207
Length = 205
Score = 106 bits (264), Expect = 8e-26
Identities = 30/244 (12%), Positives = 68/244 (27%), Gaps = 44/244 (18%)
Query: 292 HTTKIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLSGVDG 351
H +I ++ D + + E+ + + G
Sbjct: 4 HKHRILIL-------DFGSQYTQLVARRVRELGVYCELWAWDVTEAQIR-----DFNPSG 51
Query: 352 VLVPGGFGDRGVEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVLGLEGAHSSELNP 411
+++ GG E A ++ E P G+C GMQ ++ +V
Sbjct: 52 IILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASN-------ER 104
Query: 412 ETPFPVIDLMPEQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASDLIYERHRHRYEFNNE 471
E + ++++ + V + + P + H +
Sbjct: 105 EFGYAQVEVVNDSALVRGIEDALTADGKPL----------------LDVWMSHGDKVTA- 147
Query: 472 YRTQLIESGLTIAGTSPDGRLVECVEVKDHPWFVAVQYHPELKSRPNRPHPLFVGFVGAA 531
I S ++ + ++ ++ VQ+HPE+ + FV
Sbjct: 148 -----IPSDFITVASTESCP-FAIMANEEKRFY-GVQFHPEVTHTRQG-MRMLERFVRDI 199
Query: 532 LNNK 535
+
Sbjct: 200 CQCE 203
>1aa7A [a.95.1.1] INFLUENZA VIRUS MATRIX PROTEIN
Length = 158
Score = 100 bits (250), Expect = 4e-24
Identities = 11/140 (7%), Positives = 26/140 (18%), Gaps = 12/140 (8%)
Query: 273 RDIDNAEWIDMVHRITHLTHTTKIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWI 332
+ I + + GK +L V+ +
Sbjct: 7 VETYVLSIIPSGPLKAEIAQRLEDVFAGKNTDL-----EVLMEWLKTRPILSPLTKGILG 61
Query: 333 NAEDVTKENVDELLSGVDGVLVPGGFG-----DRGVEGKIEAIRWARENKKPFLGICLGM 387
+T + L + G + K+ I L
Sbjct: 62 FVFTLTVPSERGLQR--RRFVQNALNGNGDPNNMDKAVKLYRKLKREITFHGAKEISLSY 119
Query: 388 QCAVIEYARNVLGLEGAHSS 407
+ ++ +
Sbjct: 120 SAGALASCMGLIYNRMGAVT 139
>1gpwB [c.23.16.1] AMIDOTRANSFERASE HISH
Length = 200
Score = 100 bits (249), Expect = 4e-24
Identities = 33/245 (13%), Positives = 66/245 (26%), Gaps = 53/245 (21%)
Query: 295 KIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLSGVDGVLV 354
+I ++ +++ + N E I + D + +
Sbjct: 2 RIGIISVGP---GNIMNLYRGVKRASE----NFEDVSIELVE------SPRNDLYDLLFI 48
Query: 355 PGGFGD------RGVEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVLGLEGAHSSE 408
PG I+ +R E+++ +G+CLGMQ E
Sbjct: 49 PGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAP---------- 98
Query: 409 LNPETPFPVIDLMPEQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASDLIYERHRHRYEF 468
+ G + KL + + + + Y +
Sbjct: 99 --------------------GVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYY 138
Query: 469 NNEYRTQLIESGLTIAGTSPDGRLVECVEVKDHPWFVAVQYHPELKSRPNRPHPLFVGFV 528
+ E + T DG + V+ Q+HPE S+ L +
Sbjct: 139 FVHTYRAVCEEEHVLGTTEYDGE-IFPSAVRKGRIL-GFQFHPEKSSKI--GRKLLEKVI 194
Query: 529 GAALN 533
+L+
Sbjct: 195 ECSLS 199
>1o1yA [c.23.16.1] CONSERVED HYPOTHETICAL PROTEIN TM1158
Length = 230
Score = 97.1 bits (241), Expect = 4e-23
Identities = 29/250 (11%), Positives = 63/250 (25%), Gaps = 58/250 (23%)
Query: 292 HTTKIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDE-----LL 346
H ++ + + + + + + + ++E LL
Sbjct: 2 HHVRVLAIRHVEI--EDLGXXEDIFREKNW----SFDYLDTPKGEKLERPLEEYSLVVLL 55
Query: 347 SGVDGVLVPGGFGDRGVEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVLGLEGAHS 406
G G ++ + + I + + PFLGI LG Q +
Sbjct: 56 GGYXGAYEEEK--YPFLKYEFQLIEEILKKEIPFLGIXLGSQXLAKVLGAS--------- 104
Query: 407 SELNPETPFPVIDLMPEQKDVEDLGGTMRLGLYPCK-LEDNTFCKDVYASDLIYERHRHR 465
V +G Y + + DN F ++ +++ H
Sbjct: 105 --------------------VYRGKNGEEIGWYFVEKVSDNKFFREFPDRLRVFQWHGDT 144
Query: 466 YEFNNEYRTQLIESGLTIAGTSPDGRLVECVEVKDHPWFVAVQYHPELKSRPNRPHPLFV 525
++ G + V +Q+H E+ +R
Sbjct: 145 FDLPRRATRVFTSEKYENQGF-------------VYGKAVGLQFHIEVGART--XKRWIE 189
Query: 526 GFVGAALNNK 535
+ K
Sbjct: 190 AYKDELEKKK 199
>1q7rA [c.23.16.1] PREDICTED AMIDOTRANSFERASE
Length = 202
Score = 96.5 bits (239), Expect = 7e-23
Identities = 40/248 (16%), Positives = 62/248 (25%), Gaps = 59/248 (23%)
Query: 289 HLTHTTKIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLSG 348
+ KI ++G L A V A+ G E + E L G
Sbjct: 2 YFQSNXKIGVLG----LQGAVREHVRAIEACG------AEAVIVKK--------SEQLEG 43
Query: 349 VDGVLVPGGFGD-----RGVEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVLGLEG 403
+DG+++PGG G E ++ KP G C G+
Sbjct: 44 LDGLVLPGGESTTXRRLIDRYGLXEPLKQFAAAGKPXFGTCAGLILLAKRIVGYD----- 98
Query: 404 AHSSELNPETPFPVIDLMPEQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASDLIYERHR 463
P + L + G ++
Sbjct: 99 -----------EPHLGLXDITVERNSFGRQRESFEAELSIKGVGDGFVGV---------- 137
Query: 464 HRYEFNNEYRTQLIESGLTIAGTSPDGRLVECVEVKDHPWFVAVQYHPELKSRPNRPHPL 523
F G+ + T D V + + +HPEL R
Sbjct: 138 ----FIRAPHIVEAGDGVDVLATYNDR----IVAARQGQFL-GCSFHPELTDDH-RLXQY 187
Query: 524 FVGFVGAA 531
F+ V A
Sbjct: 188 FLNXVKEA 195
>1qdlB [c.23.16.1] PROTEIN (ANTHRANILATE SYNTHASE (TRPG-SUBUNIT))
Length = 195
Score = 93.4 bits (231), Expect = 6e-22
Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 43/231 (18%)
Query: 301 KYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLSGVDGVLVPGG--- 357
+ D Y S V + I ++++ + ++ + D +++ G
Sbjct: 2 DLTLIIDNYDSFVYNIAQIVGEL--GSYPIVIRNDEISIKGIERI--DPDRLIISPGPGT 57
Query: 358 FGDRGVEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVLGLEGAHSSELNPETPFPV 417
R G + + P LG+CLG Q + + +++
Sbjct: 58 PEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNI----- 112
Query: 418 IDLMPEQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASDLIYERHRHRYEFNNEYRTQLI 477
V + ++ G+ H +
Sbjct: 113 -------ILVNNSPLSLYYGIAKE----------------FKATRYHSLVVDEV------ 143
Query: 478 ESGLTIAGTSPDGRLVECVEVKDHPWFVAVQYHPELKSRPNRPHPLFVGFV 528
L + S + + + +++P + VQ+HPE + + F+
Sbjct: 144 HRPLIVDAISAEDNEIMAIHHEEYPIY-GVQFHPESVGTSL-GYKILYNFL 192
>1jvnA2 [c.23.16.1] BIFUNCTIONAL HISTIDINE BIOSYNTHESIS PROTEIN A:-3
-- 229
Length = 232
Score = 87.5 bits (216), Expect = 3e-20
Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 43/232 (18%)
Query: 291 THTTKIALV---GKYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLS 347
+H + ++ ++ S+ A+ H G E++ + + D +S
Sbjct: 2 SHMPVVHVIDVESGNLQ------SLTNAIEHLG------YEVQLVKSPK------DFNIS 43
Query: 348 GVDGVLVPGGFGDRGV------EGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVLGL 401
G +++PG G + IR E+ KP +GI +G+Q +
Sbjct: 44 GTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAG------SV 97
Query: 402 EGAHSSELNPETPFPVIDLMPEQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASDLIYER 461
E S+ LN F + +K V ++G + + Y
Sbjct: 98 ESPKSTGLN-YIDFKLSRFDDSEKPVPEIGWNSC-------IPSENLFFGLDPYKRYYFV 149
Query: 462 HRHRYEFNNEYRTQLIESGLTIAGTSPDGRLVECVEVKDHPWFVAVQYHPEL 513
H N+E + L G IA K++ A Q+HPE
Sbjct: 150 HSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKNN--IFATQFHPEK 199
>1ei5A2 [b.61.3.1] D-AMINOPEPTIDASE A:418 -- 520
Length = 103
Score = 83.0 bits (205), Expect = 8e-19
Identities = 9/88 (10%), Positives = 19/88 (21%), Gaps = 5/88 (5%)
Query: 2 SKNTKYVFVTGGVVSSLGKGITAASLGRLLKNRGLSVSIQKFDPYLNIDPGTMSPYQHGE 61
+ GG + +G S L + G V + ++ +
Sbjct: 18 LDADLLLVSEGGAIYGAFEGFLGKSDMYPLYSVGSDVWLLPVQRSMD-----APSPGEWK 72
Query: 62 VFVTDDGAETDLDLGHYERFIDENLTQN 89
+ D L +
Sbjct: 73 LVFRRDDKGEITGLSVGCWLARGVEYRR 100
>1ka9H [c.23.16.1] IMIDAZOLE GLYCEROL PHOSPHTATE SYNTHASE
Length = 195
Score = 75.0 bits (183), Expect = 2e-16
Identities = 33/217 (15%), Positives = 53/217 (24%), Gaps = 41/217 (18%)
Query: 320 GLSNDTNVE--IEWINAEDVTKENVDELLSGVDGVLVPGGFGDRGV------EGKIEAIR 371
G N + +E ++ D +++PG V G +E +R
Sbjct: 9 GSGNLRSAAKALEAAGFSVAVAQDPKAHE-EADLLVLPGQGHFGQVMRAFQESGFVERVR 67
Query: 372 WARENKKPFLGICLGMQCAVIEYARNVLGLEGAHSSELNPETPFPVIDLMPEQKDVEDLG 431
E PFLGIC+GMQ + E + G+ G P V +G
Sbjct: 68 RHLERGLPFLGICVGMQ-VLYEGSEEAPGVRGLG--------LVPGEVRRFRAGRVPQMG 118
Query: 432 GTMRLGLYPCKLEDNTFCKDVYASDLIYERHRHRYEFNNEYRTQLIESGLTIAGTSPDGR 491
Y + + + G
Sbjct: 119 WNALEFGGAFAPLTGRHF---------YFANSYYGPLTPYSLGKGEYEGTPFTALLAKEN 169
Query: 492 LVECVEVKDHPWFVAVQYHPELKSRPNRPHPLFVGFV 528
+A Q+HPE +
Sbjct: 170 ------------LLAPQFHPEKSGKAG--LAFLALAR 192
>2ghrA1 [c.23.16.8] HOMOSERINE O-SUCCINYLTRANSFERASE A:17 -- 297
Length = 269
Score = 71.2 bits (174), Expect = 3e-15
Identities = 28/226 (12%), Positives = 67/226 (29%), Gaps = 45/226 (19%)
Query: 295 KIALVGKYVELHDAYISVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLS-GVDGVL 353
KIA++ + ++ + + L +++ ++ E + ++ + DG++
Sbjct: 21 KIAILNLXPTKQETEAQLLRLIGNTPL----QLDVHLLHXESSFYKTFRDIENEKFDGLI 76
Query: 354 VPGG------FGDRGVEGKIEAI-RWARENKKPFLGICLGMQCAVIEYARNVLGLEGAHS 406
+ G F + +++ I +++ N L IC G Q + +
Sbjct: 77 ITGAPVETLSFEEVDYWEELKRIXEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKX 136
Query: 407 SELNPETPFPVIDLMPEQKDVEDLGGTMRLGLYPCKLEDNTFCKDVYASDLIYERHRHRY 466
+ F K ++ +L + H
Sbjct: 137 FGV-----FEHEVREQHVKLLQGFD------------------------ELFFAPHSRHT 167
Query: 467 EFNNEYRTQLIESGLTIAGTSPDGRLVECVEVKDHPWFVAVQYHPE 512
E ++ LT+ S + V V ++ H E
Sbjct: 168 EVRESDIREV--KELTLLANSEEAG-VHLVIGQEGRQV-FALGHSE 209
>1sy7A1 [c.23.16.3] CATALASE 1 A:553 -- 736
Length = 184
Score = 70.3 bits (171), Expect = 5e-15
Identities = 14/159 (8%), Positives = 32/159 (20%), Gaps = 20/159 (12%)
Query: 315 ALNHGGLSNDTNVEIEWINAEDVTKENVDELLSGVDGVLVPGGFGD----RGVEGKIEAI 370
++ ++ + + + VD + +PGG + I
Sbjct: 37 GPRRSKVTAANGSTVQPHHHLE------GFRSTMVDAIFIPGGAKAAETLSKNGRALHWI 90
Query: 371 RWARENKKPFLGICLGMQCAVIEYARNV---LGLEGAHSSELNPETPFPVIDLMPEQKDV 427
R A + K + A H S + + +
Sbjct: 91 REAFGHLKAIGATGEAVDLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKI 150
Query: 428 E--DLGGTMRLGLYPCKLEDNTFCKDVYASDLIYERHRH 464
G + + D +
Sbjct: 151 AKGAAGFLGEFFYAIAQHRNWDRELDGLH-----SMIAY 184
>1j42A [c.23.16.2] RNA-BINDING PROTEIN REGULATORY SUBUNIT
Length = 185
Score = 67.9 bits (165), Expect = 3e-14
Identities = 14/139 (10%), Positives = 37/139 (26%), Gaps = 14/139 (10%)
Query: 293 TTKIA-LVGKYVELHDAYISVVEALNHGGLSNDT------NVEIEWINAEDVTKENVDEL 345
+ + ++ K E + + V+ + G+ + + ++++
Sbjct: 1 SKRALVILAKGAEEME-TVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDA 59
Query: 346 L--SGVDGVLVPGGFGD----RGVEGKIEAIRWARENKKPFLGICLGMQCAVIEYARNVL 399
D V++PGG E ++ K IC G +
Sbjct: 60 KKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGCGS 119
Query: 400 GLEGAHSSELNPETPFPVI 418
+ ++
Sbjct: 120 KVTTHPLAKDKMMNGGHYT 138
>1a9xB2 [c.23.16.1] CARBAMOYL PHOSPHATE SYNTHETASE (SMALL CHAIN)
B:1653 -- 1880
Length = 228
Score = 50.3 bits (120), Expect = 5e-09
Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 50/198 (25%)
Query: 332 INAEDVTKENVDELLSGVDGVLVPGGFGDRGVEGK-IEAIRWARENKKPFLGICLGMQCA 390
+AEDV K N D G+ + G GD I AI+ E P GI LG Q
Sbjct: 71 TSAEDVLKMNPD-------GIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGIXLGHQLL 123
Query: 391 VIEYARNVLGLEGAHSSELNPETPFPVIDLMPEQKDVEDLGGTMRLGLYPCKLEDNTFCK 450
+ + ++ H +P V+D+ ++
Sbjct: 124 ALASGAKTVKMKFGHHGGNHP---------------VKDVE------------KNVVMIT 156
Query: 451 DVYASDLIYERHRHRYEFNNEYRTQLIESGLTIAGTSPDGRLVECVEVKDHPWFVAVQYH 510
+ E + + L + S ++ + D P F + Q +
Sbjct: 157 AQNHGFAVDEAT--------------LPANLRVTHKSLFDGTLQGIHRTDKPAF-SFQGN 201
Query: 511 PELKSRPNRPHPLFVGFV 528
PE P+ PLF F+
Sbjct: 202 PEASPGPHDAAPLFDHFI 219
>1suwA [e.52.1.1] PROBABLE INORGANIC POLYPHOSPHATE/ATP-NAD KINASE
Length = 249
Score = 43.0 bits (101), Expect = 8e-07
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 24/95 (25%)
Query: 295 KIALVGKYVELHDAYI-SVVEALNHGGLSNDTNVEIEWINAEDVTKENVDELLSGVDGVL 353
+ A+V K D ++ + EAL + E E L D ++
Sbjct: 2 RAAVVYKT----DGHVKRIEEALKR-------------LEVEVELFNQPSEELENFDFIV 44
Query: 354 VPGGFGDRGVEGKIEAIRWARENKKPFLGICLGMQ 388
GG G + ++ + P GI G
Sbjct: 45 SVGGDG-----TILRILQKLK-RCPPIFGINTGRV 73
>1q32A2 [d.136.1.3] TYROSYL-DNA PHOSPHODIESTERASE A:302 -- 538
Length = 209
Score = 36.1 bits (83), Expect = 1e-04
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 156 PFLEAIRQIKYDVGK---ENVCFIHVTLVPYLGKAGELKTKPTQHSVKELRSIGIQPDII 212
+L I + + EN+ + H+ ++P PT + E I+P II
Sbjct: 4 HYLCQTSSIGTSLSRARDENL-WTHL-MIPLFTGIMSPPILPTNSLINEYSQRKIKPYII 61
>2fexA1 [c.23.16.2] CONSERVED HYPOTHETICAL PROTEIN A:1 -- 188
Length = 188
Score = 34.9 bits (80), Expect = 2e-04
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 14/72 (19%)
Query: 319 GGLSNDTNVEIEWINAEDVTKENVDELLSGVDGVLVPGGFG--DRGVEGKIEAIRWAREN 376
GGL + + ++ D+ D +++PGG ++ R+
Sbjct: 46 GGLKVTPDTSYDALDPVDI------------DALVIPGGLSWEKGTAADLGGLVKRFRDR 93
Query: 377 KKPFLGICLGMQ 388
+ GIC
Sbjct: 94 DRLVAGICAAAS 105
>1g8mA2 [c.97.1.4] AICAR TRANSFORMYLASE-IMP CYCLOHYDROLASE A:201 --
593
Length = 393
Score = 34.0 bits (77), Expect = 4e-04
Identities = 17/124 (13%), Positives = 28/124 (22%), Gaps = 16/124 (12%)
Query: 259 GLDRLVCEKLGLGCRDIDNAEWIDMVHRITHLTHTTKIALVGKYVELHDAYISVVEALNH 318
K ID + + V +L +A A
Sbjct: 276 SXKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAXFEEVPA--QLTEAEKKQWIAKLT 333
Query: 319 GGLSNDTNVEIEWINAEDVTKENVDELL-SGVDGVLVPGGFGDRGVEGKIEAIRWARENK 377
V + ++NVD GV ++ P G + I E
Sbjct: 334 A-------VSLSSDA-FFPFRDNVDRAKRIGVQFIVAPSG----SAADE-VVIEACNELG 380
Query: 378 KPFL 381
+
Sbjct: 381 ITLI 384
>1g2iA [c.23.16.2] PROTEASE I
Length = 166
Score = 32.8 bits (75), Expect = 0.001
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 336 DVTKENVDELLSGVDGVLVPGGFG---DRGVEGKIEAIRWARENKKPFLGICLGMQ 388
D+T + V+ D +++PGG R E + R KP IC G Q
Sbjct: 51 DLTFDKVN--PEEFDALVLPGGRAPERVRLNEKAVSIARKXFSEGKPVASICHGPQ 104
Database: 40scop73nmM
Posted date: Nov 2, 2009 11:39 AM
Number of letters in database: 1,678,726
Number of sequences in database: 9549
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9549
Number of Hits to DB: 19,070,555
Number of extensions: 1434059
Number of successful extensions: 5542
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 5392
Number of HSP's successfully gapped: 176
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)