BLASTP 2.2.16 [Mar-25-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ABO49306.1 dred0 ABO49306.1 GIB00494CH01 "protein of unknown
function UPF0118"
(343 letters)
Database: sws57.9x
510,076 sequences; 179,409,320 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YRRI_BACSU RecName: Full=UPF0118 membrane protein yrrI; 160 2e-41
YUEF_BACSU RecName: Full=UPF0118 membrane protein yueF; 119 3e-29
YUBA_BACSU RecName: Full=UPF0118 membrane protein yubA; 116 3e-28
PERM_HAEIN RecName: Full=Putative permease perM homolog; 107 1e-25
TQSA_SHIFL RecName: Full=AI-2 transport protein tqsA;AltName: Fu... 94 2e-21
TQSA_ECOLI RecName: Full=AI-2 transport protein tqsA;AltName: Fu... 94 2e-21
YHHT_ECOLI RecName: Full=UPF0118 inner membrane protein yhhT; 75 1e-15
YHHT_ECO57 RecName: Full=UPF0118 inner membrane protein yhhT; 75 1e-15
Y1211_METTH RecName: Full=UPF0118 membrane protein MTH_1211; 74 1e-15
PERM_ECOLI RecName: Full=Putative permease perM; 73 4e-15
PERM_ECO57 RecName: Full=Putative permease perM; 73 4e-15
Y063_SYNY3 RecName: Full=UPF0118 membrane protein sll0063; 70 4e-14
Y1800_ARCFU RecName: Full=UPF0118 membrane protein AF_1800; 67 2e-13
YCT2_BACPF RecName: Full=UPF0118 membrane protein in ctaF 3'regi... 64 2e-12
Y1187_THEMA RecName: Full=UPF0118 membrane protein TM_1187; 59 8e-11
Y060_SYNY3 RecName: Full=UPF0118 membrane protein sll0060; 58 1e-10
YDBI_BACSU RecName: Full=UPF0118 membrane protein ydbI; 57 2e-10
Y630_RICPR RecName: Full=UPF0118 membrane protein RP630; 50 3e-08
YTVI_BACSU RecName: Full=UPF0118 membrane protein ytvI; 48 1e-07
Y006_BORBU RecName: Full=UPF0118 membrane protein BB_0006; 41 2e-05
Y553_TREPA RecName: Full=UPF0118 membrane protein TP_0553; 37 2e-04
Y1177_METJA RecName: Full=UPF0118 membrane protein MJ1177; 35 0.001
>YRRI_BACSU RecName: Full=UPF0118 membrane protein yrrI;
Length = 353
Score = 160 bits (405), Expect = 2e-41
Identities = 91/287 (31%), Positives = 153/287 (53%), Gaps = 2/287 (0%)
Query: 49 LVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKMVENIPLYTDQVEEIV 108
+ E + +G PR ++IL++Y+ L GVP ++ QL + ENIP++ + ++
Sbjct: 59 VTEWLHGKGLPRTLSILVIYVLFFGGIGWALYKGVPVLIVQLTDLSENIPMFAETYNGLL 118
Query: 109 RNIQKRFADSSMPPGVQQIVDERIRWVESRVLAIVRKSMDLLMALLSNLFYIALAPVLAF 168
++ D P G+ +D+ IR E+ + ++ + +L A P L F
Sbjct: 119 LHVHNHTDD--WPDGMHHRIDKMIRQTEAFFAGTIEGAISGIRNVLDYFLIAATIPFLVF 176
Query: 169 YIMKDLKLIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIRGHLTVVVIVGILSSLAFMV 228
Y++KD++L+K + PK + R VDD ++IRG L V +I+G+++ ++F V
Sbjct: 177 YMVKDIELMKKTVWYLTPKSWRKRGSAFLRDVDDSLGDYIRGQLLVCLILGVIAGISFWV 236
Query: 229 IGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVGIALLHSKYMTLKVILAVLIIQQVEGNI 288
GL +IPYFGP IGA PA+ IA+ S L V++ V I+Q +EGNI
Sbjct: 237 FGLPYPLILGLISGVTNVIPYFGPFIGAVPALLIAMTISVKAVLVVVITVFILQFMEGNI 296
Query: 289 ISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLAVPLAAIIKIIV 335
+SP I+G + +HP+VI+ I GM+LAVP A++K+++
Sbjct: 297 LSPFIVGRSLKMHPVVIMXXXXXXXXXXXIVGMILAVPATAVLKVMM 343
>YUEF_BACSU RecName: Full=UPF0118 membrane protein yueF;
Length = 369
Score = 119 bits (299), Expect = 3e-29
Identities = 78/306 (25%), Positives = 143/306 (46%), Gaps = 13/306 (4%)
Query: 35 PFILAIVLVYMLNPLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKMV 94
P ++A +L ++ NP+V +EK+ PR P + Q+ +
Sbjct: 43 PMLIAGILYFIFNPVVRLLEKK-IPRTXXXXXXXXXXXXXXXXXSASVGPIITAQVTGLF 101
Query: 95 ENIPLYTDQVEEIVRNIQKRFADSSMPPGVQQIVDERIRWVESRVLAIVRKSMDLLMALL 154
N+P Y Q++ + +++ + M Q V I +E + + ++ + + L
Sbjct: 102 NNLPDYIKQIQALTKDLSHSQWFTWMMN--QDYVS--ISKIEQSLTSFLQNLPQNITSSL 157
Query: 155 SNLF--------YIALAPVLAFYIMKDLKLIKNWTRSIVPKELVEDVFYLARKVDDVFSN 206
S +F P + FY++KD + I+P + + + + D +
Sbjct: 158 SAVFGXXXXXXXXXXXXPFILFYMLKDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAA 217
Query: 207 FIRGHLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVGIALLH 266
+ +G L + + VG + +++ GL +IPY GP +GAAPAV + +
Sbjct: 218 YFQGQLLICLFVGTACFIGYLIAGLPYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMD 277
Query: 267 SKYMTLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLAVP 326
S L I+ V+I+QQ++GN++SP ++G + HPL II+ L+ G GI GM+LAVP
Sbjct: 278 SPAKALFAIIVVVIVQQLDGNLLSPLVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVP 337
Query: 327 LAAIIK 332
+ A++K
Sbjct: 338 VYAVVK 343
>YUBA_BACSU RecName: Full=UPF0118 membrane protein yubA;
Length = 388
Score = 116 bits (291), Expect = 3e-28
Identities = 81/319 (25%), Positives = 140/319 (43%), Gaps = 14/319 (4%)
Query: 34 VPFILAIVLVYMLNPLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKM 93
+P IL ++ Y+LNP+V+ +E P + Q+ +
Sbjct: 56 LPIILTGIVFYLLNPVVDFLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFLKEQIMSL 115
Query: 94 VENIPLYTDQVEEIVRNIQKRFADSSMPPGVQQIVDERIRWVESRV----LAIVRKSM-- 147
++NIP Y D VE N K+ S+ QQ ++ I + ++V IV +
Sbjct: 116 IDNIPRYVDVVE----NQTKQLIGSNFVNQAQQTMNINISDLATKVSDQAATIVNSTFTG 171
Query: 148 --DLLMALLSNLFYIALAPVLAFYIMKDLKLIKNWTRSIVPKELVEDVFYLARKVDDVFS 205
+ + AL + I P + FY++KD + + + VP L E + + +++ S
Sbjct: 172 VGNFIGALTEIIISIVTVPFILFYLLKDGRKLPVYILKFVPTRLKEQTYTVLSEMNHRLS 231
Query: 206 NFIRGHLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVGIALL 265
++IRG + V + ++PY G +
Sbjct: 232 SYIRGQIIVSXXXXXXXXXXXXXXXXDYASLLAVIAACTSIVPYLGXXXXXXXXXXXXXV 291
Query: 266 HSKYMTLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLAV 325
S M LK+++ I+Q +EG +ISP+IMG + +HP+ II LL G LFG+ G++LA+
Sbjct: 292 TSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLLTAGKLFGVVGIILAI 351
Query: 326 PLAAIIKIIVS--FVWRKL 342
P A+ K+I + F W K+
Sbjct: 352 PGYAVAKVITTHLFDWFKM 370
>PERM_HAEIN RecName: Full=Putative permease perM homolog;
Length = 349
Score = 107 bits (268), Expect = 1e-25
Identities = 74/308 (24%), Positives = 146/308 (47%), Gaps = 10/308 (3%)
Query: 35 PFILAIVLVYMLN-PLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKM 93
P ++A+VL Y+L P+ + PR++A ++++ + +A + VP + NQ +
Sbjct: 41 PLLIALVLSYLLEIPINFLNQYLKCPRMLATILIFGSFIGLAAVFFLVLVPMLWNQTISL 100
Query: 94 VENIPLYTDQVEEIVRNIQKRFA---DSSMPPGVQQIVDERIRWVESRVLAIVRKSMDLL 150
+ ++P ++ E + N+ K + D SM + V E+I + V+ S+ +
Sbjct: 101 LSDLPAMFNKSNEWLLNLPKNYPELIDYSMVDSIFNSVREKILGFGE---SAVKLSLASI 157
Query: 151 MALLSNLFYIALAPVLAFYIMKDLKLIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIRG 210
M L+S Y L P++ F+++KD + +PK F +++ SN+I G
Sbjct: 158 MNLVSLGIYAFLVPLMMFFMLKDKSELLQGVSRFLPKNR-NLAFXRWKEMQQQISNYIHG 216
Query: 211 HLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVGIALLHSKYM 270
L ++IV +++ + F++ GL L+PY G +I P +AL
Sbjct: 217 KLLEILIVTLITYIIFLIFGLNYPLLLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGIS 276
Query: 271 TL--KVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLAVPLA 328
+I+A + Q ++GN++ P + + LHPL+II++ A+PLA
Sbjct: 277 PTFWYIIIAFAVSQLLDGNLLVPYLFSEAVNLHPLIIIISXXXXXXXXXXXXXXXAIPLA 336
Query: 329 AIIKIIVS 336
++K +++
Sbjct: 337 TLVKAVIN 344
>TQSA_SHIFL RecName: Full=AI-2 transport protein tqsA;AltName:
Full=Transport of quorum-sensing signal protein;
Length = 344
Score = 93.6 bits (231), Expect = 2e-21
Identities = 77/304 (25%), Positives = 137/304 (45%), Gaps = 19/304 (6%)
Query: 34 VPFILAIVLVYMLNPLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKM 93
VPFILA+ + +LNPLV+ M + PRV+A+ IL +V+ LL Y + + L ++
Sbjct: 35 VPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAY----LGSALNEL 90
Query: 94 VENIPLYTDQVEEIVRNIQKRFADSSMPPGVQQIVDERIRWVESRVLAIVRKSMDLLMAL 153
+P Y + + ++ ++ G+ VD+ +++
Sbjct: 91 TRTLPQYRNSIMTPLQALEPLL----QRVGIDVSVDQLAHYIDPXXXXXXXXXXXXXXXX 146
Query: 154 -LSNLFYIALAPVLAFYIMKDL--KLIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIRG 210
+S++F + L K + R VE + + R +D V S+++
Sbjct: 147 XMSSIFXXXXXXXXXXXEVPQLPGKFQQMMARP------VEGMAAIQRAIDSV-SHYLVL 199
Query: 211 HLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVG-IALLHSKY 269
+ +I G+++ + + IP G ++ A P + + + + Y
Sbjct: 200 KTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFY 259
Query: 270 MTLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLAVPLAA 329
L V+ L+I V GNI+ P+IMG +GL LV+ ++L+ G L G GMLL+VPL
Sbjct: 260 EALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTI 319
Query: 330 IIKI 333
I+KI
Sbjct: 320 IVKI 323
>TQSA_ECOLI RecName: Full=AI-2 transport protein tqsA;AltName:
Full=Transport of quorum-sensing signal protein;
Length = 344
Score = 93.6 bits (231), Expect = 2e-21
Identities = 77/304 (25%), Positives = 137/304 (45%), Gaps = 19/304 (6%)
Query: 34 VPFILAIVLVYMLNPLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKM 93
VPFILA+ + +LNPLV+ M + PRV+A+ IL +V+ LL Y + + L ++
Sbjct: 35 VPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAY----LGSALNEL 90
Query: 94 VENIPLYTDQVEEIVRNIQKRFADSSMPPGVQQIVDERIRWVESRVLAIVRKSMDLLMAL 153
+P Y + + ++ ++ G+ VD+ +++
Sbjct: 91 TRTLPQYRNSIMTPLQALEPLL----QRVGIDVSVDQLAHYIDPXXXXXXXXXXXXXXXX 146
Query: 154 -LSNLFYIALAPVLAFYIMKDL--KLIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIRG 210
+S++F + L K + R VE + + R +D V S+++
Sbjct: 147 XMSSIFXXXXXXXXXXXEVPQLPGKFQQMMARP------VEGMAAIQRAIDSV-SHYLVL 199
Query: 211 HLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVG-IALLHSKY 269
+ +I G+++ + + IP G ++ A P + + + + Y
Sbjct: 200 KTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFY 259
Query: 270 MTLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLAVPLAA 329
L V+ L+I V GNI+ P+IMG +GL LV+ ++L+ G L G GMLL+VPL
Sbjct: 260 EALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTI 319
Query: 330 IIKI 333
I+KI
Sbjct: 320 IVKI 323
>YHHT_ECOLI RecName: Full=UPF0118 inner membrane protein yhhT;
Length = 349
Score = 74.7 bits (182), Expect = 1e-15
Identities = 69/303 (22%), Positives = 139/303 (45%), Gaps = 17/303 (5%)
Query: 34 VPFILAIVLVYMLNPLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKM 93
V +LA+ +LNPLV +RG R VAI I+ + ++I T+L+ GV + +
Sbjct: 35 VQLLLALFFAIVLNPLVTWFIRRGVQRPVAITIVVVVMLIALTALV--GV--LAASFNEF 90
Query: 94 VENIPLYTDQVEEIVRNIQKR--FADSSMPPGVQQIVDERIRWVESRVLAIVRKSMDLLM 151
+ +P + ++ + +Q+ F + M P + ++ ++S +V + L+
Sbjct: 91 ISMLPKFNKELTRKLFKLQEMLPFLNLHMSP------ERMLQRMDSE--KVVTFTTALMT 142
Query: 152 ALLSNLFYIALAPVLAFYIMKDLKLIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIRGH 211
L + +++ + R + + + L R + V S+++
Sbjct: 143 GLSGAMASXXXXXXXXXXXXXEVRHVPYKMRFALNNPQIH-IAGLHRALKGV-SHYLALK 200
Query: 212 LTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPA-VGIALLHSKYM 270
+ + G++ L ++G++ +P G +I A P + + L + Y
Sbjct: 201 TLLSLWTGVIVWLGLELMGVQFALMWAVLAFLLNYVPNIGAVISAVPPMIQVLLFNGVYE 260
Query: 271 TLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLAVPLAAI 330
+ V L++ V GNI+ P++MG+ +G+ +V+ ++LL G L G GMLL+VPL ++
Sbjct: 261 CILVGALFLVVHMVIGNILEPRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLLSVPLTSV 320
Query: 331 IKI 333
KI
Sbjct: 321 CKI 323
>YHHT_ECO57 RecName: Full=UPF0118 inner membrane protein yhhT;
Length = 349
Score = 74.7 bits (182), Expect = 1e-15
Identities = 69/303 (22%), Positives = 139/303 (45%), Gaps = 17/303 (5%)
Query: 34 VPFILAIVLVYMLNPLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKM 93
V +LA+ +LNPLV +RG R VAI I+ + ++I T+L+ GV + +
Sbjct: 35 VQLLLALFFAIVLNPLVTWFIRRGVQRPVAITIVVVVMLIALTALV--GV--LAASFNEF 90
Query: 94 VENIPLYTDQVEEIVRNIQKR--FADSSMPPGVQQIVDERIRWVESRVLAIVRKSMDLLM 151
+ +P + ++ + +Q+ F + M P + ++ ++S +V + L+
Sbjct: 91 ISMLPKFNKELTRKLFKLQEMLPFLNLHMSP------ERMLQRMDSE--KVVTFTTALMT 142
Query: 152 ALLSNLFYIALAPVLAFYIMKDLKLIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIRGH 211
L + +++ + R + + + L R + V S+++
Sbjct: 143 GLSGAMASXXXXXXXXXXXXXEVRHVPYKMRFALNNPQIH-IAGLHRALKGV-SHYLALK 200
Query: 212 LTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPA-VGIALLHSKYM 270
+ + G++ L ++G++ +P G +I A P + + L + Y
Sbjct: 201 TLLSLWTGVIVWLGLELMGVQFALMWAVLAFLLNYVPNIGAVISAVPPMIQVLLFNGVYE 260
Query: 271 TLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLAVPLAAI 330
+ V L++ V GNI+ P++MG+ +G+ +V+ ++LL G L G GMLL+VPL ++
Sbjct: 261 CILVGALFLVVHMVIGNILEPRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLLSVPLTSV 320
Query: 331 IKI 333
KI
Sbjct: 321 CKI 323
>Y1211_METTH RecName: Full=UPF0118 membrane protein MTH_1211;
Length = 334
Score = 74.3 bits (181), Expect = 1e-15
Identities = 60/300 (20%), Positives = 134/300 (44%), Gaps = 40/300 (13%)
Query: 38 LAIVLVYMLNPLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKMVENI 97
L V Y++ P+ R+ +R V+I++ + V++ +L++ V ++N ++
Sbjct: 36 LGAVFAYIVRPVALRINRRIPYLSVSIILAMIVVIMPLVGILVFTVDSIINSAPSLLS-- 93
Query: 98 PLYTDQVEEIVRNIQKRFADSSMPPG---VQQIVDERIRWVESRVLAIVRKSMDLLMALL 154
A S PG +Q + + + + + I+ S++ ++A+L
Sbjct: 94 -----------------LAGSIHVPGAGNLQPSAENTLANLRTVLRDILSGSLNYVVAIL 136
Query: 155 SNLFYIALAPVL----AFYIMKDLKLIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIRG 210
++ I+L + FY +D K + + R+++P+E + +A + + V + G
Sbjct: 137 QSVPMISLQLFVFLSSTFYFARDGKRLVGYIRTLIPEETRPFMERMASETERVLLSIFYG 196
Query: 211 HLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVGIALLHSKYM 270
H + +G+++++ F ++G +LIP GP P L ++
Sbjct: 197 HFLTALAIGLMAAVGFHLLGYPYAILLGIMTGLFQLIPVIGPWAAYTP-----LSIYDFV 251
Query: 271 TLKVILAVLIIQQVEGNIIS-------PKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLL 323
T ++ VL++ + G +S PK+ G +HP++ +V L G ++G+AG ++
Sbjct: 252 TGNILRGVLVL--IFGLFLSTIDIYLRPKLSGKYADIHPMIFLVGFLGGPVVWGVAGFIV 309
>PERM_ECOLI RecName: Full=Putative permease perM;
Length = 353
Score = 72.8 bits (177), Expect = 4e-15
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 15/251 (5%)
Query: 93 MVENIPLYTDQVEEIVRNIQKRFADSSMPPGVQQIVDERIRWVESRVL----AIVRKSMD 148
++ ++P +++ + + +R+ + M G+ + E +R SR+L ++V+ S+
Sbjct: 99 LIRDMPGMLNKLSDFAATLPRRYP-ALMDAGIIDAMAENMR---SRMLTMGDSVVKISLA 154
Query: 149 LLMALLSNLFYIALAPVLAFYIMKDLKLIKNWTRSIVPKE--LVEDVFYLARKVDDVFSN 206
L+ LL+ KD + + N R ++P+ L V+ ++++ +N
Sbjct: 155 SLVGLLTIAXXXXXXXXXXXXXXKDKEQMLNAVRRVLPRNRGLAGQVW---KEMNQQITN 211
Query: 207 FIRGHLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVGIALLH 266
+IRG + +++VGI + LIPY G + P VG+AL
Sbjct: 212 YIRGKVLEMIVVGIATWXXXXXXXXXXXXXXAVLVGFSVLIPYIGAFVVTIPVVGVALFQ 271
Query: 267 SKYMT--LKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLA 324
T LIIQ ++GN++ P + + LHPLVII++ A
Sbjct: 272 FGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSXXXXXXXXXXXXXXXA 331
Query: 325 VPLAAIIKIIV 335
+PLA +IK ++
Sbjct: 332 IPLATLIKAVI 342
>PERM_ECO57 RecName: Full=Putative permease perM;
Length = 353
Score = 72.8 bits (177), Expect = 4e-15
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 15/251 (5%)
Query: 93 MVENIPLYTDQVEEIVRNIQKRFADSSMPPGVQQIVDERIRWVESRVL----AIVRKSMD 148
++ ++P +++ + + +R+ + M G+ + E +R SR+L ++V+ S+
Sbjct: 99 LIRDMPGMLNKLSDFAATLPRRYP-ALMDAGIIDAMAENMR---SRMLTMGDSVVKISLA 154
Query: 149 LLMALLSNLFYIALAPVLAFYIMKDLKLIKNWTRSIVPKE--LVEDVFYLARKVDDVFSN 206
L+ LL+ KD + + N R ++P+ L V+ ++++ +N
Sbjct: 155 SLVGLLTIAXXXXXXXXXXXXXXKDKEQMLNAVRRVLPRNRGLAGQVW---KEMNQQITN 211
Query: 207 FIRGHLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVGIALLH 266
+IRG + +++VGI + LIPY G + P VG+AL
Sbjct: 212 YIRGKVLEMIVVGIATWXXXXXXXXXXXXXXAVLVGFSVLIPYIGAFVVTIPVVGVALFQ 271
Query: 267 SKYMT--LKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLA 324
T LIIQ ++GN++ P + + LHPLVII++ A
Sbjct: 272 FGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSXXXXXXXXXXXXXXXA 331
Query: 325 VPLAAIIKIIV 335
+PLA +IK ++
Sbjct: 332 IPLATLIKAVI 342
>Y063_SYNY3 RecName: Full=UPF0118 membrane protein sll0063;
Length = 395
Score = 69.7 bits (169), Expect = 4e-14
Identities = 65/309 (21%), Positives = 135/309 (43%), Gaps = 26/309 (8%)
Query: 37 ILAIVLVYMLNPLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKMVEN 96
++A V+ ++LN V +EK+G+ R VA ++L +I+ T+L + +P ++Q +++V
Sbjct: 62 LIASVIAFLLNYPVAWLEKQGAKRFVAASFVFLTALIIFTALGVTLIPLALSQAQQLVAR 121
Query: 97 IPLYTDQVEEIVRNIQKRFADSSMPPGVQQIVDERIRWVESRVLAIVRKSMDLLMALLSN 156
+P + D ++ + + ++ P ++ + + SR+ A L L +
Sbjct: 122 LPDWLDSGQKQLVLLDQKAEILGWPVNFDGLIPQ----INSRLAA-------ELQNLAGS 170
Query: 157 LFYIALAPVLAFYIMKDLKLIKNWTRSIVPKELVEDVF-----YLARKVDDVFS------ 205
+AL+ + F +++ L + +DV+ +L + FS
Sbjct: 171 TLNLALS-LTVFTVVRLLDVXXXXXXXXXXXXHTDDVWQSIIGWLPERFQKPFSDTLRRS 229
Query: 206 --NFIRGHLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVGIA 263
N+ G L + + F+++ + LIP FG +G +
Sbjct: 230 FQNYFLGQLVSATCMALGLISGFLLLKVPFGLLFGLTVGVMALIP-FGGSVGIVLVTFLV 288
Query: 264 LLHSKYMTLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLL 323
L M N I+P+++G+ GL+P ++++LL G + G+ G+++
Sbjct: 289 ALRDIGMXXXXXXXXXXXXXXXENGIAPRVLGSVTGLNPFWVLISLLTGARIGGLLGVIV 348
Query: 324 AVPLAAIIK 332
AVP A +IK
Sbjct: 349 AVPSAVMIK 357
>Y1800_ARCFU RecName: Full=UPF0118 membrane protein AF_1800;
Length = 340
Score = 67.0 bits (162), Expect = 2e-13
Identities = 60/280 (21%), Positives = 125/280 (44%), Gaps = 24/280 (8%)
Query: 37 ILAIVLVYMLNPLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKMVEN 96
++ +V Y+ P+ ++E G R+ A +I V++ + L+ YG+ + +NQ ++ +
Sbjct: 32 VMGVVFAYVAKPVKRKIEHVG--RIKASVIATAIVILPISVLMFYGLIQGLNQAIYLITH 89
Query: 97 IPLYTDQVEEIVRNIQKRFADSSMPPGVQQIVDERIRWVESRVLAIVRKSMD-------L 149
+ +E + NI + G+++ +E ++W+ S V +I++ S+
Sbjct: 90 YKV----IESGILNILSKM-------GIEE-GEEYVKWITSNVFSILQSSIQPSAVEITK 137
Query: 150 LMALLSNLFYIALAPVLAFYIMKDLKLIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIR 209
LL F+I++ V+ FY + D++ T S+VP +D F +
Sbjct: 138 KATLLILNFFISI--VVCFYALADMENFVRRTTSVVPXXXXXXXXXXXXXIDVTFESLWF 195
Query: 210 GHLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVGIALLHSKY 269
G+ V +++G++S F+ + LIP F + P LL
Sbjct: 196 GNFVVAILIGLVSLPFFLYFNVPFAPLLSGLMFLAALIPIFAEWMIILPVSLYLLLVDVG 255
Query: 270 MTLK-VILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVA 308
L +++ V+ + + I+ P +G +HPLV+++A
Sbjct: 256 RGLSFLLIGVVFLYVLPELILRPYFVGYTSKIHPLVLMLA 295
>YCT2_BACPF RecName: Full=UPF0118 membrane protein in ctaF
3'region;AltName: Full=ORF2;
Length = 385
Score = 63.9 bits (154), Expect = 2e-12
Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 9/258 (3%)
Query: 81 YGVPRMVNQLEKMVENIPLYTDQVEEIVRNIQKRFADS--SMPPGVQQIVDERIRWVESR 138
Y + + Q ++VEN P Y + N Q+ + ++PP + Q ++ + S
Sbjct: 112 YIATKAITQGTQIVENSPQYISDINRAWLNFQRNLEEKYENLPPELVQEINITVTNTLSD 171
Query: 139 VLAIVRKS------MDLLMALLSNLFYIALAPVLAFYIMKDLKLIKNWTRSIVPKELVED 192
+ + +R L+ ++ L + + F M +L ++ S + + E
Sbjct: 172 LRSNIRDRNLIQDITSLISSIPGYLVTFLVYLIALFLFMLELPRLREKLYSYLSERTKEK 231
Query: 193 VFYLARKVDDVFSNFIRGHLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGP 252
V ++ ++ V F + V +I+ I++ + + I E + +P G
Sbjct: 232 VNFMTSRLSYVIWGFFKAQFLVSIIIFIVTLIGLLFIAPEVALLMAFIIWLIDFVPIIGS 291
Query: 253 LIGAAPAVGIALLHSKYMTLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAG 312
++ AP L+ T + PK+MG +GL PL ++A+ G
Sbjct: 292 IVILAPWAIFQLIVGDVSTGSKXXXXXXXXXXXRRTVEPKVMGKHIGLSPLATLIAMYLG 351
Query: 313 GHLFGIAGMLLAVPLAAI 330
LFG+ G ++ PL I
Sbjct: 352 LMLFGVIGFIIG-PLLVI 368
>Y1187_THEMA RecName: Full=UPF0118 membrane protein TM_1187;
Length = 324
Score = 58.5 bits (140), Expect = 8e-11
Identities = 60/298 (20%), Positives = 118/298 (39%), Gaps = 23/298 (7%)
Query: 38 LAIVLVYMLNPLVERMEK-RGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQLEKMVEN 96
L+I++ Y+ L ++K R PRV++ ++++L + A + P +V + +K+
Sbjct: 37 LSIIIDYVARFLEVFIKKPRVLPRVISNVLVFLTIAYSAVNFF----PVIVREAQKVFSE 92
Query: 97 IPLYTDQVEEIVRNIQKRFADSSMPPGVQQIVDERIRWVESRVLAIVRKSMDLLMALLSN 156
I D++ + NI +P +V K ++ + +
Sbjct: 93 I----DRIRSGLENID-------IPGWXXXXXXXXXXXXXXXXXXLVNK----IVGYVPS 137
Query: 157 LFYIALAPVLAFYIMKDLK-LIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIRGHLTVV 215
A+ V+ +I+ LK LIK + P + +L + F F+ G + V
Sbjct: 138 FITAAILIVITAFIVSSLKRLIKENVHYLFPTNPSDGKEFLKTTYTE-FERFVGGQVLVA 196
Query: 216 VIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAAPAVGIAL-LHSKYMTLKV 274
+ VG+ + + + +PY G +I A P + +A +H
Sbjct: 197 IFVGLFVGFGAFIFKIPSAFFLGMLAFVTDFVPYLGVVISAIPLLMLAFSVHXXXXXXXX 256
Query: 275 ILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLLAVPLAAIIK 332
+ Q+E +++PKI N + +H G LF G+L+A+P +K
Sbjct: 257 XXXXVAANQLEMWVLAPKIQSNTLNVHWFXXXXXXXXXGDLFSFGGVLIALPFLIFLK 314
>Y060_SYNY3 RecName: Full=UPF0118 membrane protein sll0060;
Length = 344
Score = 57.8 bits (138), Expect = 1e-10
Identities = 24/71 (33%), Positives = 48/71 (67%)
Query: 262 IALLHSKYMTLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGM 321
IA S ++ +KV+ ++ QV N ++PK++G G+HP+ I+++L+ G + G+ G+
Sbjct: 267 IASFQSIWLGIKVLAIATVVDQVVENGLAPKLLGRVTGVHPVWILLSLMIGAKVAGLLGI 326
Query: 322 LLAVPLAAIIK 332
L+A+P+A+ I+
Sbjct: 327 LVAIPIASFIR 337
>YDBI_BACSU RecName: Full=UPF0118 membrane protein ydbI;
Length = 350
Score = 57.0 bits (136), Expect = 2e-10
Identities = 53/268 (19%), Positives = 107/268 (39%), Gaps = 15/268 (5%)
Query: 62 VAILILYLGVVIVATSLLMYGV-PRMVNQLEKMVENIPLYTDQVEEIVRNIQKRFADSSM 120
+ L + L V++ + Y V + QL K +++I + D + I F D +
Sbjct: 69 ITFLYMLLAVLLTVGGFVFYPVVAAQIQQLVKQIKHIAYHPDSIP-FFDEITSVFGDIN- 126
Query: 121 PPGVQQIVDERIRWVESRVLAIVRKSMDLLMALLSNLFYIALAPVLAFYIMKDLKLIKNW 180
+ V E V + + I + ++MAL+ ++F++ L+ ++ K
Sbjct: 127 ---ISSYVKEGFNVVYTYLADISTFGLQVVMALILSMFFLFEKKRLSEFMAK-------- 175
Query: 181 TRSIVPKELVEDVFYLARKVDDVFSNFIRGHLTVVVIVGILSSLAFMVIGLEXXXXXXXX 240
++ + E++ + K F + + ++ IL+ +A ++
Sbjct: 176 FKTSKLRVFYEEIAFFGSKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGLSIM 235
Query: 241 XXXXELIPYFGPLIGAAPAVGIALLHSKYM-TLKVILAVLIIQQVEGNIISPKIMGNCMG 299
LIP G +I P IA M L ++L + I +E ++PK+M
Sbjct: 236 VFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFAIHAIETYFLNPKLMSAKTE 295
Query: 300 LHPLVIIVALLAGGHLFGIAGMLLAVPL 327
L L+ H FGI G+++ +P+
Sbjct: 296 LPIFFTFTVLIFSEHFFGIWGLIIGIPI 323
>Y630_RICPR RecName: Full=UPF0118 membrane protein RP630;
Length = 351
Score = 50.1 bits (118), Expect = 3e-08
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 175 KLIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIRGHLTVVVIVGILSSLAFMVIGLEXX 234
K+I N S++P + + + ++++ S++IRG L + +++ S+AF
Sbjct: 173 KIITNM-ESLLPIKTRPKILEILSAINNLLSSYIRGQLNICLLLSTYYSIAFTXXXXXXX 231
Query: 235 XXXXXXXXXXELIPYFGPLIG--AAPAVGIALLHSKYMTLKVILAVLIIQQVEGNIISPK 292
P G I +G L +++ LI E I++PK
Sbjct: 232 XXXXXXXXXXXXXPLLGTFISFLLTLIIGYLTFGITSKLLYIMIIYLIGNIGESYILTPK 291
Query: 293 IMGNCMGLHPLVIIVALLAGGHL 315
I+G+ +GLHPL II A+ A G L
Sbjct: 292 IIGDKIGLHPLWIIFAIFACGSL 314
>YTVI_BACSU RecName: Full=UPF0118 membrane protein ytvI;
Length = 371
Score = 47.8 bits (112), Expect = 1e-07
Identities = 49/291 (16%), Positives = 117/291 (40%), Gaps = 25/291 (8%)
Query: 35 PFILAIVLVYMLNPLVERMEK-RGSPRVV--------------AILILYLGVVIVATSLL 79
PF++A++L +++P+V+ ++K G PR + + + ++ T+ L
Sbjct: 35 PFLIALILSSVIHPVVDYLDKVTGFPRTINXXXXXXXXXXXXXXXXTILVAEIVTGTAYL 94
Query: 80 MYGVPRMVNQLEKMVENIPLYTDQVEEIVRNIQKRFAD------SSMPPGVQQIVDERIR 133
+P ++ E L+T ++ + + F + +S+ +Q + D +
Sbjct: 95 AKTLPPHISTFISYCEK--LFTTHIQPLYNELTLLFQELETNQQASIVTHIQTLGDSAAK 152
Query: 134 WVESRVLAIVRKSMDLLMALLSNLFYIALAPVLA-FYIMKDLKLIKNWTRSIVPKELVED 192
+L+ + + + ALL N + + +LA F++ KD +K I+P + +
Sbjct: 153 NA-GLLLSHILEMIPRFFALLPNTAAVLIFSLLATFFMTKDWHKLKAMLVLILPDRVTAN 211
Query: 193 VFYLARKVDDVFSNFIRGHLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGP 252
++ ++ + FI+ +V I ++ + ++ +E +L+PY G
Sbjct: 212 SKAISSELKKAMTGFIKAQAVLVFITMVIVFIGLSLLKVEHAATIAFLIGLVDLLPYLGA 271
Query: 253 LIGAAPAVGIALLHSKYMTLKVILAVLIIQQVEGNIISPKIMGNCMGLHPL 303
P + + + + + PKI+ +G+ PL
Sbjct: 272 GSVFVPWILYLSITGQLPQAXXXXXXXXXXXXQRQLTEPKILSKSIGIDPL 322
>Y006_BORBU RecName: Full=UPF0118 membrane protein BB_0006;
Length = 374
Score = 40.8 bits (94), Expect = 2e-05
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 10/149 (6%)
Query: 202 DVFSNFIRGHLTVVVIV----GILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGPLIGAA 257
D +N I +L + ++V GIL + + G + IP G ++ A
Sbjct: 202 DTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLSFVFNFIPSIGSIL-AV 260
Query: 258 PAVGIALLHSKYMTLKVILAVLI----IQQVEGNIISPKIMGNCMGLHPLVIIVALLAGG 313
+ I L Y L ++L V I IQ + GNI+ PK+ G + + P
Sbjct: 261 FFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPKMQGKRLDISPXXXXXXXXXXX 320
Query: 314 HLFGIAGMLLAVPLAAIIKIIVSFV-WRK 341
++ P I+K+IV V W K
Sbjct: 321 XXXXXXXXXISYPFTVIVKVIVDNVSWLK 349
>Y553_TREPA RecName: Full=UPF0118 membrane protein TP_0553;
Length = 403
Score = 37.4 bits (85), Expect = 2e-04
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 250 FGPLIGAAPA---VGIAL-LHSKYM--TLKVILAVLIIQQVEGNIISPKIMGNCMGLHPL 303
F PL+G A VGI++ S +M TL + +A I ++ + + P ++ N M +HPL
Sbjct: 280 FLPLVGCACVWLPVGISIGFTSGWMRGTLFLFVAGSSITIID-SFLRPLLLQNKMRIHPL 338
Query: 304 VIIVALLAGGHLFGIAGMLLAVPLAAIIKIIV 335
+I ++L G FG GM+L L ++ ++
Sbjct: 339 LIFFSMLGGVQTFGFNGMVLGPILVILLFTVI 370
>Y1177_METJA RecName: Full=UPF0118 membrane protein MJ1177;
Length = 334
Score = 35.0 bits (79), Expect = 0.001
Identities = 52/296 (17%), Positives = 111/296 (37%), Gaps = 16/296 (5%)
Query: 35 PFI----LAIVLVYMLNPLVERMEKRGSPRVVAILILYLGVVIVATSLLMYGVPRMVNQL 90
PFI + YM P+ + K+ + + A L + + ++ + T + + M L
Sbjct: 27 PFIDVLAYSCAFAYMALPVYNILRKKFNKTISAGLAISIYILPIMTITIYALLTFMEIIL 86
Query: 91 EKMVENIPLYTDQVEEIVRNIQ-KRFADSSMPPGVQQIVDERIRWVESRVLAIVRKSMDL 149
++I Y +++ I + +R ++ + + +DE I+++ S+ + L
Sbjct: 87 SFNTKSIEPYINEILSIYNSFMLERIINNEQI--IAKYIDEFIKYLVSQFSGKIIDVGYL 144
Query: 150 LMALLSNLFYIALAPVLAFYIMKDLKLIKNWTRSIVPKELVEDVFYLARKVDDVFSNFIR 209
++ ++ LF L FY ++D KN S VP E E + + D + N
Sbjct: 145 IVKVIMVLF-------LTFYFLRDGDKAKNLIISFVPDEYKEKMRIYLSYLHDSYKNLFX 197
Query: 210 GHLTVVVIVGILSSLAFMVIGLEXXXXXXXXXXXXELIPYFGP-LIGAAPAVGIALLHS- 267
L+P G ++ + A+ L+H
Sbjct: 198 XXXXXXXXXXXXXXXXXXXXXXPYAELFAIITGIFALLPILGGWMVYISIAIYFFLIHDY 257
Query: 268 KYMTLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIVALLAGGHLFGIAGMLL 323
I L + +I P ++ + +HP+++++A L G++G +
Sbjct: 258 TKAVFMFIYGELFLSIAPDFVIRPYLVKKEVDIHPVLVVIAFLMAPLSLGLSGFAI 313
Database: sws57.9x
Posted date: Nov 5, 2009 10:46 AM
Number of letters in database: 179,409,320
Number of sequences in database: 510,076
Lambda K H
0.317 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 510076
Number of Hits to DB: 8,536,164,002
Number of extensions: 345440147
Number of successful extensions: 847430
Number of sequences better than 1.0e-03: 8666
Number of HSP's gapped: 837593
Number of HSP's successfully gapped: 9058
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.7 bits)