hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /home/genome/SCOP/1.73/Scop1.73.bin
Sequence file:            /home/genome/FASTA/gib_10902.fasta
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Query sequence: ABO50272.1
Accession:      [none]
Description:    dred0 ABO50272.1 GIB00494CH01 "Radical SAM domain protein"

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
0049709  Radical SAM enzymes                             58.1      7e-16   1
0043105  Radical SAM enzymes                             29.4    1.8e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
0043105    1/1      14   185 ..     1   204 [.    29.4  1.8e-08
0049709    1/1      14   185 ..     1   180 [.    58.1    7e-16

Alignments of top-scoring domains:
0043105: domain 1 of 1, from 14 to 185: score 29.4, E = 1.8e-08
                   *->gegltleealallrlpllellceaakcprrdrfgrrvtltllisvkt
                                                             tl++++ t
  ABO50272.1    14    ---------------------------------------TLYLNI-T 20   

                   ngCplrCkyCavsagsgtglkkprllspeeileeakaaaelG..vkrvvl
                   n C + C++C  ++   tg+    +l+ e  +ee+   ++  + ++++v+
  ABO50272.1    21 NQCMNQCVFCIRETE--TGVGYNLWLNKEPTVEEVLDSVKNPqsYNEIVF 68   

                   tg.gepllrpdgaeylleliraikelgle.itt.tngllde....ellee
                    g+gepl     +e++  +++ +ke+g + i ++tng  ++++ + ++ e
  ABO50272.1    69 CGyGEPLS---RLEVVKGVASKLKEMGARsIRInTNGQANKyyghNIIPE 115  

                   lkeaGldrvnlslet.dpelykkirpghtye.dvlealerarea.Gi..k
                   l+ + +d++ +sl +++  +y +i++ ++ e+ +  +le ar+++G++ +
  ABO50272.1   116 LAGL-IDTMSISLNAqNATVYTEICRPADGEnAYFSMLEFARKCvGVipR 164  

                   vksglilglgetdeellelleaplfdlfgrppltlllevtnrCNlrCsyCyapagpglelrplvrere
                                  tl+l++tn+C  +C++C ++  +g + + l+  +e
  ABO50272.1    14    ------------TLYLNITNQCMNQCVFCIRETETGVG-YNLWLNKE 47   

                   lsleeilrlidelaelgvkevvltG.GEPllrpd.leelieylkelggll
                    ++ee+l+ ++   ++   e+v+ G+GEPl r ++++ ++ +lke+g   
  ABO50272.1    48 PTVEEVLDSVKNPQSY--NEIVFCGyGEPLSRLEvVKGVASKLKEMG-AR 94   

                   rvsltTNGtllt....elaeelkeagldrvnisldgldpethdkir....
                    ++++TNG   +++ ++ + el+   +d+++isl++ ++ ++ +i+  ++
  ABO50272.1    95 SIRINTNGQANKyyghNIIPELAG-LIDTMSISLNAQNATVYTEICrpad 143  

                   gvkgsfekvleaiellreagipvkintvvlpgenddeleelld