RPS-BLAST 2.2.16 [Mar-25-2007]

Database: 95pdb09Oct16_0000; 95pdb09Oct16_0001; 95pdb09Oct16_0002;
95pdb09Oct16_0003 
           66,450 sequences; 15,983,541 total letters

Searching..................................................done

Query= ABO49707.1 dred0 ABO49707.1 GIB00494CH01 "Ion transport 2
domain protein"
         (298 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2ahyA [x.x.x] POTASSIUM CHANNEL PROTEIN[MASQUE : MEMB(X) 66 / CO...    57   8e-11
2ahyB [x.x.x] POTASSIUM CHANNEL PROTEIN[MASQUE : MEMB(X) 66 / CO...    56   1e-10
2ahzA [x.x.x] POTASSIUM CHANNEL PROTEIN[MASQUE : MEMB(X) 66 / CO...    54   4e-10
2atkC [x.x.x] VOLTAGE-GATED POTASSIUM CHANNEL[MASQUE : MEMB(X) 4...    51   5e-09
1bl8A [f.14.1] PROTEIN (POTASSIUM CHANNEL PROTEIN)[MASQUE : MEMB...    50   8e-09
2a9hA [x.x.x] VOLTAGE-GATED POTASSIUM CHANNEL[MASQUE : MEMB(X) 4...    46   1e-07
3effK [x.x.x] VOLTAGE-GATED POTASSIUM CHANNEL[MASQUE : MEMB(X) 4...    43   2e-06

>2ahyA [x.x.x] POTASSIUM CHANNEL PROTEIN[MASQUE : MEMB(X) 66 /
           COIL(x) 0]
          Length = 104

 Score = 56.8 bits (137), Expect = 8e-11
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 10/37 (27%)

Query: 230 SFIDSTGPVTEHIRLLYFTIITFTSVGYGDITPRGNF 266
             ID+          LYF+++T T+VG G+ +P+ +F
Sbjct: 49  RPIDA----------LYFSVVTLTTVGDGNFSPQTDF 75


>2ahyB [x.x.x] POTASSIUM CHANNEL PROTEIN[MASQUE : MEMB(X) 66 /
           COIL(x) 0]
          Length = 103

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 10/37 (27%)

Query: 230 SFIDSTGPVTEHIRLLYFTIITFTSVGYGDITPRGNF 266
             ID+          LYF+++T T+VG G+ +P+ +F
Sbjct: 49  RPIDA----------LYFSVVTLTTVGDGNFSPQTDF 75


>2ahzA [x.x.x] POTASSIUM CHANNEL PROTEIN[MASQUE : MEMB(X) 66 /
           COIL(x) 0]
          Length = 105

 Score = 54.5 bits (131), Expect = 4e-10
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 10/37 (27%)

Query: 230 SFIDSTGPVTEHIRLLYFTIITFTSVGYGDITPRGNF 266
             ID+          LYF+++T T+VG G+ +P+ +F
Sbjct: 49  RPIDA----------LYFSVVTLTTVGDGNFSPQTDF 75


>2atkC [x.x.x] VOLTAGE-GATED POTASSIUM CHANNEL[MASQUE : MEMB(X) 46 /
           COIL(x) 0]
          Length = 103

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 10/41 (24%)

Query: 225 NTNPYSFIDSTGPVTEHIRLLYFTIITFTSVGYGDITPRGN 265
                ++  +          L++++ T T+VGYGD+ P   
Sbjct: 35  GAQLITYPRA----------LWWSVATATTVGYGDLYPVTL 65


>1bl8A [f.14.1] PROTEIN (POTASSIUM CHANNEL PROTEIN)[MASQUE : MEMB(X)
           46 / COIL(x) 0]
          Length = 97

 Score = 50.1 bits (120), Expect = 8e-09
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 10/38 (26%)

Query: 225 NTNPYSFIDSTGPVTEHIRLLYFTIITFTSVGYGDITP 262
                ++  +          L++++ T T+VGYGD+ P
Sbjct: 34  GAQLITYPRA----------LWWSVETATTVGYGDLYP 61


>2a9hA [x.x.x] VOLTAGE-GATED POTASSIUM CHANNEL[MASQUE : MEMB(X) 46 /
           COIL(x) 0]
          Length = 97

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 10/36 (27%)

Query: 230 SFIDSTGPVTEHIRLLYFTIITFTSVGYGDITPRGN 265
           S+ D+          L++++ T T+VGYGD+ P   
Sbjct: 39  SYPDA----------LWWSVETATTVGYGDLYPVTL 64


>3effK [x.x.x] VOLTAGE-GATED POTASSIUM CHANNEL[MASQUE : MEMB(X) 46 /
           COIL(x) 0]
          Length = 139

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 10/38 (26%)

Query: 225 NTNPYSFIDSTGPVTEHIRLLYFTIITFTSVGYGDITP 262
                ++  +          L++++ T T+VGYGD+ P
Sbjct: 35  GAQLITYPRA----------LWWSVETATTVGYGDLYP 62


  Database: 95pdb09Oct16_0000
    Posted date:  Oct 27, 2009  4:27 PM
  Number of letters in database: 15,983,541
  Number of sequences in database:  66,450
  
Lambda     K      H
   0.318    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 66450
Number of Hits to DB: 24,227,351
Number of extensions: 1510073
Number of successful extensions: 17677
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 7707
Number of HSP's successfully gapped: 337
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.7 bits)