RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= ABO50761.1 dred0 ABO50761.1 GIB00494CH01 "type III
restriction-modification system methyla.."
         (227 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF01555 N6_N4_Mtase "DNA methylase"                                    65   9e-14

>PF01555 N6_N4_Mtase "DNA methylase"
          Length = 218

 Score = 65.1 bits (158), Expect = 9e-14
 Identities = 39/90 (43%), Positives = 48/90 (53%), Gaps = 26/90 (28%)

Query: 126 VKMIYIDPPYNTGNDFIYEDDFAQDADEYLANSGQYDENGNRLVQNTESNGRFHTDWLNM 185
           V +IYIDPPYNTG D+           E   N G               + + H+DWL  
Sbjct: 1   VDLIYIDPPYNTGKDY-----------EAFFNYG---------------DKKSHSDWLEF 34

Query: 186 IYPRLKLAKDLLTEDGAIFISIDDNEVENL 215
           +YPRLK A+ LL  DG+IF+SIDDNEV  L
Sbjct: 35  MYPRLKEARRLLKPDGSIFVSIDDNEVAYL 64


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 15,663,080
Number of extensions: 884135
Number of successful extensions: 112008
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 2292
Number of HSP's successfully gapped: 234
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)