# hmmscan :: search sequence(s) against a profile HMM database
# HMMER 3.0b2 (June 2009); http://hmmer.org/
# Copyright (C) 2009 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /home/niguts/usr08/shisakam/FASTA/gib_13445.fasta
# target HMM database:             /home/niguts/usr08/shisakam/PFAM/ver24.0/Pfam-A.hmm
# sequence search space set to:    100000
# set reporting thresholds to:     GA cutoffs
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       ACD30680.1  [L=90]
Description: ftul2 hupB GIB00719CH01 "DNA-binding protein HU-beta"
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-35  121.7   1.3    6.7e-35  121.6   0.9    1.0  1  PF00216  Bacterial DNA-binding protein
  ------ inclusion threshold ------
        3.7    9.6   0.0        7.1    8.7   0.0    1.5  1  PF03831  PhnA protein
        6.9    9.3   0.1        8.7    9.0   0.1    1.1  1  PF10025  Uncharacterized conserved protein (DUF2267)
        8.1    9.1   0.1         26    7.5   0.0    1.8  1  PF08541  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
        8.4    8.9   0.5        8.2    9.0   0.3    1.2  1  PF01387  Synuclein
        9.2    8.9   0.0         12    8.5   0.0    1.2  1  PF00486  Transcriptional regulatory protein, C terminal
        9.9    8.7   0.2         16    8.1   0.1    1.3  1  PF08793  2-cysteine adaptor domain
         10    7.9   0.0         15    7.3   0.0    1.2  1  PF01144  Coenzyme A transferase
         11    8.6   0.2         16    8.0   0.2    1.3  1  PF12085  Protein of unknown function (DUF3562)
         11    8.9   0.0         14    8.5   0.0    1.3  1  PF09713  Plant protein 1589 of unknown function (A_thal_3526
         12    7.9   0.2         22    7.1   0.1    1.4  1  PF03719  Ribosomal protein S5, C-terminal domain
         15    7.1   0.1         17    6.9   0.1    1.1  1  PF11602  ATPase P4 of dsRNA bacteriophage phi-12
         16    7.9   0.2         23    7.3   0.2    1.2  1  PF12324  Helix-turn-helix domain of alkylmercury lyase
         16    7.5   0.4         18    7.3   0.3    1.1  1  PF03433  EspA-like secreted protein
         21    7.6   0.0         38    6.7   0.0    1.4  1  PF07498  Rho termination factor, N-terminal domain
         22    7.3   0.0         29    6.9   0.0    1.3  1  PF08142  AARP2CN (NUC121) domain
         23    7.3   0.1         52    6.2   0.1    1.6  1  PF00440  Bacterial regulatory proteins, tetR family
         25    6.6   0.0         27    6.5   0.0    1.1  1  PF00777  Glycosyltransferase family 29 (sialyltransferase)
         25    6.9   0.0         27    6.9   0.0    1.3  1  PF06903  VirK protein
         31    6.8   0.1         43    6.4   0.1    1.1  1  PF03906  Phage T7 tail fibre protein
         39    5.4   0.2         46    5.1   0.1    1.1  1  PF11651  P22 coat protein - gene protein 5
         42    6.8   0.1         63    6.2   0.0    1.2  1  PF08529  NusA N-terminal domain
         47    6.4   0.0      1e+02    5.3   0.0    1.5  1  PF08239  Bacterial SH3 domain
         47    6.3   0.0    1.3e+02    4.9   0.0    1.8  1  PF03880  DbpA RNA binding domain
         50    6.4   0.2         76    5.8   0.1    1.3  1  PF06296  Protein of unknown function (DUF1044)
         60    5.2   0.1         67    5.1   0.0    1.1  1  PF02277  Phosphoribosyltransferase
         61    5.8   0.0         70    5.6   0.0    1.1  1  PF08756  YfkB-like domain
         66    6.2   1.1    1.7e+02    4.9   0.1    2.0  1  PF08102  Scorpion antimicrobial peptide
         74    5.3   0.0    1.3e+02    4.5   0.0    1.4  1  PF12003  Domain of unknown function (DUF3497)
         82    4.3   0.1         94    4.1   0.0    1.1  1  PF00465  Iron-containing alcohol dehydrogenase
      1e+02    6.0   0.0    1.1e+02    5.9   0.0    1.2  1  PF08477  Miro-like protein
      1e+02    5.3   0.0    1.7e+02    4.7   0.0    1.3  1  PF11197  Protein of unknown function (DUF2835)
    1.1e+02    3.9   0.1    1.4e+02    3.5   0.1    1.1  1  PF06723  MreB/Mbl protein
    1.1e+02    5.1   0.0    1.4e+02    4.8   0.0    1.1  1  PF08714  Formaldehyde-activating enzyme (Fae)
    1.1e+02    5.5   0.2    1.4e+02    5.1   0.1    1.1  1  PF11075  Protein of unknown function VcgC/VcgE (DUF2780)
    1.1e+02    4.1   0.1    1.5e+02    3.7   0.0    1.1  1  PF05441  Microvirus A* protein
    1.3e+02    5.2   0.0    2.3e+02    4.4   0.0    1.4  1  PF02780  Transketolase, C-terminal domain
    1.3e+02    4.4   0.1    1.6e+02    4.0   0.0    1.1  1  PF00497  Bacterial extracellular solute-binding proteins, fa
    1.3e+02    5.1   0.0    1.7e+02    4.8   0.0    1.1  1  PF08969  Domain of unknown function (DUF1873)
    1.4e+02    5.0   0.0    3.1e+02    3.9   0.0    1.6  1  PF02796  Helix-turn-helix domain of resolvase
    1.7e+02    3.2   0.0    1.8e+02    3.1   0.0    1.1  1  PF04425  Bul1 N terminus
      2e+02    4.5   0.1    2.9e+02    4.0   0.1    1.2  1  PF05415  Beet necrotic yellow vein furovirus-type papain-lik
    2.1e+02    4.1   0.1    3.1e+02    3.5   0.1    1.3  1  PF06249  Ethanolamine utilisation protein EutQ
    2.3e+02    4.1   0.0    5.6e+02    2.8   0.0    1.4  1  PF02367  Uncharacterised P-loop hydrolase UPF0079
    2.9e+02    4.3   0.1      6e+02    3.3   0.0    1.8  1  PF03144  Elongation factor Tu domain 2
    4.2e+02    4.2   0.0    7.7e+02    3.4   0.0    1.4  1  PF11639  REDY-like protein HapK
    4.6e+02    4.1   0.1    6.3e+02    3.7   0.1    1.2  1  PF07749  Endoplasmic reticulum protein ERp29, C-terminal dom
    4.7e+02    2.9   0.0    7.8e+02    2.2   0.0    1.3  1  PF11178  Protein of unknown function (DUF2963)
    6.9e+02    2.6   0.2    1.2e+03    1.9   0.1    1.3  1  PF02532  Photosystem II reaction centre I protein (PSII 4.8 
    9.6e+02    2.4   0.7    1.7e+03    1.6   0.1    1.7  1  PF00746  Gram positive anchor


Domain and alignment annotation for each model:
>> PF00216  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.9   3.4e-38   6.7e-35       1      90 []       1      90 []       1      90 [] 0.99

  Alignments for each domain:
  == domain 1    score: 121.6 bits;  conditional E-value: 3.4e-38
                -TCCHHHHHHHCCSS-SHHHHHHHHHHHHHHHHHHHH----B-B---BEEE----TT-----SSSSS-TT-SS----EEE---HHHHHH- CS
     PF00216  1 mtkkeLikeiaektgltkkdaekivdaflesitealkkgekvelsgFGtfevkerkaregrnpktgekikipakkvvkFkpskklkeavn 90
                m+k+eL+++ia+++++tk+ a++ +da + ++t+alk+g++v+l gFGtf+vker++regrnpktge+ikipa+kv++Fk+sk lk+av+
  ACD30680.1  1 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREGRNPKTGETIKIPASKVPSFKASKGLKDAVK 90
                9***************************************************************************************96 PP

>> PF03831  PhnA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0036       7.1       7      19 ..      33      45 ..      29      56 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0036
                --B------EEES CS
     PF03831  7 GnvLadGDsVtli 19
                 + L++GDsVtl+
  ACD30680.1 33 TKALKNGDSVTLV 45
                578********98 PP

>> PF10025  Uncharacterized conserved protein (DUF2267)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0044       8.7      72     110 ..       2      40 ..       1      46 [. 0.57

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0044
     PF10025  72 saeeFlervaerlglspeeaeravraVlavlaeaisege 110
                 ++ e ++ +a+++++++e a+ +  a +a++++a+++g+
  ACD30680.1   2 NKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGD 40 
                 455566666666666666666666666666666666554 PP

>> PF08541  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.013        26      61      78 ..      31      48 ..      20      49 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.013
                HC--------EEEEE--- CS
     PF08541 61 veegklkpgdlvllvgfG 78
                  ++ lk+gd v lvgfG
  ACD30680.1 31 AVTKALKNGDSVTLVGFG 48
                45689************9 PP

>> PF01387  Synuclein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0041       8.2      45      90 ..       3      47 ..       1      82 [. 0.76

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0041
                --------TTHHHHHHHHHHH---------HHHHHHHH-----HHH CS
     PF01387 45 kegvvqsvasvaektkeqanavggavvsgvntvasktvegaeniaa 90
                k ++v ++a  a+ tke a++  +a +++v+  a k  + +  +  
  ACD30680.1  3 KSELVSAIAKEADVTKEVASNTLDATIAAVTK-ALKNGDSVTLVGF 47
                6778999*********************8764.5555555555555 PP

>> PF00486  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0061        12      27      59 ..       3      38 ..       1      48 [. 0.85

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0061
                HHHHHHHHHTT-S...SSHCHHHHHHHHHHHHHHHS CS
     PF00486 27 reeLleevwgeef...evddntvdvhisrLRkkled 59
                ++eL+ ++ +e++   ev++nt+d+ i+ + k l++
  ACD30680.1  3 KSELVSAIAKEADvtkEVASNTLDATIAAVTKALKN 38
                7899999999999999************99999987 PP

>> PF08793  2-cysteine adaptor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0079        16       8      21 ..      55      70 ..      49      72 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0079
     PF08793  8 rnpt..vNPiTGRkIk 21
                r+p+  +NP TG +Ik
  ACD30680.1 55 RSPRegRNPKTGETIK 70
                6666679********9 PP

>> PF01144  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0075        15       6      26 ..      29      49 ..      24      53 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0075
                HHHHHTT-----EEEE-..TT CS
     PF01144  6 aeavakeikdGmtvavGGFgl 26
                 +av k +k+G+ v + GFg+
  ACD30680.1 29 IAAVTKALKNGDSVTLVGFGT 49
                578999**************8 PP

>> PF12085  Protein of unknown function (DUF3562)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2    0.0081        16       5      34 ..       2      31 ..       1      35 [. 0.90

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0081
     PF12085  5 dleeslkeiAeeraapadlvrrmyddevra 34
                ++ e++ +iA+e +++++  ++++d +++a
  ACD30680.1  2 NKSELVSAIAKEADVTKEVASNTLDATIAA 31
                56799**********************997 PP

>> PF09713  Plant protein 1589 of unknown function (A_thal_3526)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0     0.007        14      13      34 ..       1      22 [.       1      43 [. 0.90

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.007
     PF09713 13 MskeEcvkaLdkhanIsplvTs 34
                M+k E v+a+ k+a+++ +v s
  ACD30680.1  1 MNKSELVSAIAKEADVTKEVAS 22
                9***************999865 PP

>> PF03719  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1     0.011        22      40      67 ..      16      43 ..      14      46 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.011
                EEEEE----HHHHHHHHHHHHHT---HH CS
     PF03719 40 lakslgsrnpinvvkAtfeALkklrtpe 67
                ++k + s++   ++ A+ +ALk+  ++ 
  ACD30680.1 16 VTKEVASNTLDATIAAVTKALKNGDSVT 43
                58999999999***********988775 PP

>> PF11602  ATPase P4 of dsRNA bacteriophage phi-12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0085        17      20      47 ..      20      47 ..       3      58 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0085
                HHTS----HH---GTTS----EEEEE-- CS
     PF11602 20 vetsaikayiaavlesvkdGgsllavgv 47
                v +++ +a iaav +++k+G s+  vg 
  ACD30680.1 20 VASNTLDATIAAVTKALKNGDSVTLVGF 47
                4445566778************988886 PP

>> PF12324  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2     0.011        23      29      65 ..       6      42 ..       4      45 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.011
                HHHHHT----B-HHHH-------HHHHHHHHHH-TTS CS
     PF12324 29 LLrsLakGrpVtveslanatgktveeVkkvLaqapsv 65
                L   +ak   Vt+e   n+++ t + V k+L++  sv
  ACD30680.1  6 LVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSV 42
                5667899999*********************988776 PP

>> PF03433  EspA-like secreted protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.3    0.0091        18      64      91 ..       7      35 ..       1      44 [. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0091
     PF03433 64 mqkkaersrqaqdma.NrvdeviAkvakq 91
                +++ a+++  ++++a N +d+ iA v+k+
  ACD30680.1  7 VSAIAKEADVTKEVAsNTLDATIAAVTKA 35
                55678999999998769*********997 PP

>> PF07498  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.019        38      25      37 ..       1      13 [.       1      15 [. 0.91

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.019
     PF07498 25 lrKqeLIfaILka 37
                ++K+eL+ aI k+
  ACD30680.1  1 MNKSELVSAIAKE 13
                99********986 PP

>> PF08142  AARP2CN (NUC121) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.014        29      57      76 ..      35      54 ..      12      57 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.014
     PF08142 57 klkanqlvhipgiGDfqiek 76
                 lk++  v + g+G fq+++
  ACD30680.1 35 ALKNGDSVTLVGFGTFQVKE 54
                68999************986 PP

>> PF00440  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1     0.026        52      19      30 ..       7      18 ..       5      20 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.026
                HHHHHHHCTS-H CS
     PF00440 19 vreIAkeAGvsk 30
                v++IAkeA+v+k
  ACD30680.1  7 VSAIAKEADVTK 18
                689*******98 PP

>> PF00777  Glycosyltransferase family 29 (sialyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.013        27     190     218 ..      22      53 ..       3      63 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.013
     PF00777 190 gkrpstGllalllalelCdeVsvyGFga...s 218
                  + +   ++a++ al+  d+V+++GFg+   +
  ACD30680.1  22 SNTLDATIAAVTKALKNGDSVTLVGFGTfqvK 53 
                 45555678999****************95331 PP

>> PF06903  VirK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.013        27      22      41 ..      26      45 ..       4      71 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.013
     PF06903 22 lnsyseileAlsaGkdvtvv 41
                 ++  ++++Al++G +vt+v
  ACD30680.1 26 DATIAAVTKALKNGDSVTLV 45
                357899***********996 PP

>> PF03906  Phage T7 tail fibre protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.022        43     109     151 ..       5      47 ..       3      54 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.022
     PF03906 109 EardqtadtigvkadgnldargrrivnlanavaaiDavtlrql 151
                 E  + +a++++v+++ + ++   +i+ + +a + +D+vtl  +
  ACD30680.1   5 ELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGF 47 
                 6678899*******************************98655 PP

>> PF11651  P22 coat protein - gene protein 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.023        46     246     269 ..      23      46 ..       4      55 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.023
     PF11651 246 rqatltvsattgklkaGdvftiag 269
                    + t+ a+t++lk Gd +t+ g
  ACD30680.1  23 NTLDATIAAVTKALKNGDSVTLVG 46 
                 334445666666666666666654 PP

>> PF08529  NusA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.031        63       4      36 ..       5      37 ..       4      47 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.031
                HCCHHCSS-----SSTTCCCCCCCCCCCH.CC- CS
     PF08529  4 eaieaiakeKgidkevvieaieeaLlkaykkky 36
                e++ aiake ++ kev  +++ + +++ +k   
  ACD30680.1  5 ELVSAIAKEADVTKEVASNTLDATIAAVTKALK 37
                57899********************99997654 PP

>> PF08239  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.051     1e+02      14      29 ..      31      46 ..      27      48 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.051
     PF08239 14 kvigqlpkGekvtvlg 29
                 v+ +l++G++vt +g
  ACD30680.1 31 AVTKALKNGDSVTLVG 46
                68999********876 PP

>> PF03880  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.067   1.3e+02      14      31 ..       2      19 ..       1      23 [. 0.88

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.067
     PF03880 14 rpgdivgaianeggitge 31
                ++ ++v aia+e+++t+e
  ACD30680.1  2 NKSELVSAIAKEADVTKE 19
                6789***********986 PP

>> PF06296  Protein of unknown function (DUF1044)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.038        76      85     116 ..       9      40 ..       1      44 [. 0.82

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.038
     PF06296  85 iskkelaalkklAkellalseeqleklikkke 116
                   +ke +++k++A+++l+++ ++++k++k+++
  ACD30680.1   9 AIAKEADVTKEVASNTLDATIAAVTKALKNGD 40 
                 457899**********************9987 PP

>> PF02277  Phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.033        67     162     185 ..      27      50 ..       6      61 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.033
                 HHHHHHHHHH----HHHH------ CS
     PF02277 162 ttaaallaaLlgadaeevvGrGtg 185
                 +t aa+++aL ++d+  +vG+Gt 
  ACD30680.1  27 ATIAAVTKALKNGDSVTLVGFGTF 50 
                 355799999999999999999975 PP

>> PF08756  YfkB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.035        70       4      46 ..      14      56 ..      11      68 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.035
     PF08756  4 sdfasalevlsldelreaihrlldirdedvwmlfGtlpfypcs 46
                +d ++++ + +ld++  a+++ l+  d+ + + fGt+ +   s
  ACD30680.1 14 ADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERS 56
                788999999***************************9876555 PP

>> PF08102  Scorpion antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.087   1.7e+02       5      25 ..      67      87 ..      64      89 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.087
     PF08102  5 DwIKstAkkvwnSepvkqLKn 25
                 +IK  A+kv + +  k LK 
  ACD30680.1 67 ETIKIPASKVPSFKASKGLKD 87
                59***************9997 PP

>> PF12003  Domain of unknown function (DUF3497)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.063   1.3e+02     135     161 ..      51      76 ..      41      83 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.063
     PF12003 135 qlsdlkfPqkedakesedsislpasal 161
                 q+++ ++P+ +++++++++i++pas++
  ACD30680.1  51 QVKE-RSPREGRNPKTGETIKIPASKV 76 
                 3343.89**999************985 PP

>> PF00465  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.047        94      50      86 ..      12      48 ..       1      50 [. 0.83

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.047
                -EEEEEE.E-----HHHHHHHHTTS-T.T--EEE--- CS
     PF00465 50 ievtvfdgvepeptleeveeaaalareekadvivAvG 86
                 e +v ++v +++ +++++++++++++ +  ++v++G
  ACD30680.1 12 KEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFG 48
                45678889999***************99999999998 PP

>> PF08477  Miro-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.057   1.1e+02      12      51 ..       3      42 ..       2      74 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.057
                -HHHHHHHH-----....--SSSSSCEEEEEEEGGG-EEE CS
     PF08477 12 Kssllsqlvgeefpkkklpeeikgdtlavktlevdvdtel 51
                Ks l+s++++e +++k++ +++  +t+a  t+ +++ ++ 
  ACD30680.1  3 KSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSV 42
                899***********99999999888888877777666544 PP

>> PF11197  Protein of unknown function (DUF2835)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.085   1.7e+02      29      49 ..      65      85 ..      62      87 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.085
     PF11197 29 dGrrvqlparrlrpFltsdGi 49
                +G+++++pa++   F  s+G 
  ACD30680.1 65 TGETIKIPASKVPSFKASKGL 85
                79*********9999998886 PP

>> PF06723  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.07   1.4e+02     226     259 ..       5      38 ..       2      43 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.07
                 BTT------EEE----HHHHTHHHHHHHHHHHHH CS
     PF06723 226 dlvtglpkevevsseevrealkepvsaiveavke 259
                 +lv+ ++ke+ v++e  +++l  +++a+++a+k+
  ACD30680.1   5 ELVSAIAKEADVTKEVASNTLDATIAAVTKALKN 38 
                 5788888899998888888888888888888765 PP

>> PF08714  Formaldehyde-activating enzyme (Fae)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.069   1.4e+02     112     143 ..      10      41 ..       5      52 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.069
                 --TT---HHHHHHHHHHHHHHHHHHHH----- CS
     PF08714 112 idpeakdkkkiyeynyeatklAikrAlkkePs 143
                 i +ea+ +k++ ++  +at  A+++Alk+  s
  ACD30680.1  10 IAKEADVTKEVASNTLDATIAAVTKALKNGDS 41 
                 678899999******************98655 PP

>> PF11075  Protein of unknown function VcgC/VcgE (DUF2780)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.068   1.4e+02      42      83 ..       3      44 ..       1      46 [. 0.88

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.068
     PF11075 42 tsdLvsslssqlgvtqeqaaGGlGalLalAqsnLsgddfsqL 83
                +s+Lvs+++++ +vt+e a   l a +a   + L++ d  +L
  ACD30680.1  3 KSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTL 44
                689****************99999999999999999987666 PP

>> PF05441  Microvirus A* protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.074   1.5e+02     286     311 ..      15      40 ..       3      44 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.074
     PF05441 286 rlikkigesnlqsfiasmtvklkssd 311
                  ++k+++   l++ ia++t+ lk++d
  ACD30680.1  15 DVTKEVASNTLDATIAAVTKALKNGD 40 
                 46889999999*************99 PP

>> PF02780  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.11   2.3e+02       5      19 ..      35      49 ..      30      53 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.11
                EEESS-SEEEEEEST CS
     PF02780  5 vdregkdvtivayGs 19
                 +++g+ vt+v++G+
  ACD30680.1 35 ALKNGDSVTLVGFGT 49
                5689**********7 PP

>> PF00497  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.082   1.6e+02      27      55 ..       5      33 ..       3      45 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.082
                HHHHHHHHHTT-EEEE---SCGGHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     PF00497 27 dlakaiakrlgvklefvevsfddlipale 55
                +l+ aiak+ +v+ e+  ++ d+ i+a++
  ACD30680.1  5 ELVSAIAKEADVTKEVASNTLDATIAAVT 33
                67777888887777777657777776664 PP

>> PF08969  Domain of unknown function (DUF1873)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.083   1.7e+02      10      49 ..       5      44 ..       1      47 [. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.083
     PF08969 10 sslddLeklaevkpdlkskkikilvssarklfkkaeeyrl 49
                + ++ + k a+v++++ s+  +  + +  k +k+ + + l
  ACD30680.1  5 ELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTL 44
                567889999*****************99999999887665 PP

>> PF02796  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.15   3.1e+02      24      35 ..       7      18 ..       2      19 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.15
                HHHHHHHHT--H CS
     PF02796 24 iskIAkevnisR 35
                +s+IAke ++++
  ACD30680.1  7 VSAIAKEADVTK 18
                799*******97 PP

>> PF04425  Bul1 N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.092   1.8e+02     134     168 ..       9      43 ..       1      57 [. 0.84

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.092
     PF04425 134 pieieirvtkkvpkpgekneiesilkeytsGDiin 168
                 +i  e  vtk+v++ +    i   +k  ++GD ++
  ACD30680.1   9 AIAKEADVTKEVASNTLDATIAAVTKALKNGDSVT 43 
                 67777899*****9999***************985 PP

>> PF05415  Beet necrotic yellow vein furovirus-type papain-like endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.15   2.9e+02      10      38 ..       6      34 ..       2      44 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.15
     PF05415 10 lvvaiseclgvtlekldnlmqanvvtldk 38
                lv ai++   vt e   n ++a ++++ k
  ACD30680.1  6 LVSAIAKEADVTKEVASNTLDATIAAVTK 34
                8999******************9999987 PP

>> PF06249  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.16   3.1e+02      39      86 ..       7      54 ..       1      59 [. 0.81

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.16
     PF06249 39 lsvklidvkvkkedrldtgnPkdvvltkdlvtleeskrlgaGlmemke 86
                +s    +++v+ke+  +t +    ++tk l  ++  + +g+G  ++ke
  ACD30680.1  7 VSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKE 54
                55555567788888888999999999*******99999****999998 PP

>> PF02367  Uncharacterised P-loop hydrolase UPF0079
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.28   5.6e+02      28      50 ..       3      25 ..       2      37 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.28
                -HHHH---------------TTT CS
     PF02367 28 KTtlvkglakglgvkgevtSPtf 50
                K +lv ++ak+ +v++ev+S t 
  ACD30680.1  3 KSELVSAIAKEADVTKEVASNTL 25
                78999**************9885 PP

>> PF03144  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0       0.3     6e+02      13      28 ..      36      51 ..      35      89 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.3
                EETTCEEEEETTTECE CS
     PF03144 13 lkkGdtvrilgndtsk 28
                lk Gd v ++g +t +
  ACD30680.1 36 LKNGDSVTLVGFGTFQ 51
                8999999999966643 PP

>> PF11639  REDY-like protein HapK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.39   7.7e+02      78     101 ..       5      28 ..       2      31 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.39
                 --HHHHCCCEEEEEEE-------- CS
     PF11639  78 slveafstlaevveelaGeqleaG 101
                 +lv a  + a+v +e+a + l+a 
  ACD30680.1   5 ELVSAIAKEADVTKEVASNTLDAT 28 
                 7999**************999876 PP

>> PF07749  Endoplasmic reticulum protein ERp29, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.32   6.3e+02      21      59 ..       3      41 ..       1      45 [. 0.85

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHH---H CS
     PF07749 21 rkelleeveeavaklkdkakkyakyYlkvmekilkkgae 59
                ++el++++ ++++  k+ a+++ +  + +++k+lk+g++
  ACD30680.1  3 KSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDS 41
                678999999999999998889999999999999999876 PP

>> PF11178  Protein of unknown function (DUF2963)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.39   7.8e+02      15      23 ..      62      70 ..      53      71 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.39
     PF11178 15 npqtgkliK 23
                np+tg+ iK
  ACD30680.1 62 NPKTGETIK 70
                899999998 PP

>> PF02532  Photosystem II reaction centre I protein (PSII 4.8 kDa protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.59   1.2e+03      29      36 .]      60      67 ..      59      67 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.59
                TTSSSS-- CS
     PF02532 29 gRNPgrkd 36
                gRNP++++
  ACD30680.1 60 GRNPKTGE 67
                8***9986 PP

>> PF00746  Gram positive anchor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.83   1.7e+03      10      15 ..      63      68 ..      63      73 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.83
     PF00746 10 PkTGea 15
                PkTGe+
  ACD30680.1 63 PKTGET 68
                9***86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                       11912  (2158902 nodes)
Passed MSV filter:                       447  (0.0375252); expected 238.2 (0.02)
Passed bias filter:                      394  (0.0330759); expected 238.2 (0.02)
Passed Vit filter:                        50  (0.00419745); expected 11.9 (0.001)
Passed Fwd filter:                        50  (0.00419745); expected 0.1 (1e-05)
Initial search space (Z):             100000  [as set by --Z on cmdline]
Domain search space  (domZ):              50  [number of targets reported over threshold]
# CPU time: 0.15u 0.04s 00:00:00.19 Elapsed: 00:00:01
# Mc/sec: 1295.34
//