RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= ACD30738.1 ftul2 galU GIB00719CH01 "UTP-glucose-1-phosphate
uridylyltransferase"
         (287 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF00483 NTP_transferase "Nucleotidyl transferase"                     121   1e-30

>PF00483 NTP_transferase "Nucleotidyl transferase"
          Length = 238

 Score =  121 bits (304), Expect = 1e-30
 Identities = 88/250 (35%), Positives = 122/250 (48%), Gaps = 31/250 (12%)

Query: 6   AVFPVAGWGTRFLPATKSCPKEMLTVVDKPLIQYAVEEAIEAGCKEII-FVTSSNKKSLE 64
           AV    G GTR  P T+  PK++L V  KPLIQY +E    AG +EII  VT  +K+S+E
Sbjct: 2   AVILAGGLGTRLRPLTRERPKKLLPVGGKPLIQYTLERLAAAGIEEIIVVVTGYHKESIE 61

Query: 65  DHFDRNFELEYSLEKKQKYELLDLVKNIIPKDVSFFFVRQPEALGLGHAVLCAKPLVGIE 124
           +H    +EL                       V   +V QPE LG  HAVL A   +G E
Sbjct: 62  EHLGDGYEL----------------------GVEITYVLQPEPLGTAHAVLLAADFIGDE 99

Query: 125 DFAV-ILPDDLIYNHDCGTGTLKQMVKAVEGTDIRGCIATQQVKREKTNSYGIVAKDNDN 183
            F V +LP D + + D       ++++A   T   G +    V  E    YG++ +D D 
Sbjct: 100 PFVVLVLPGDHLIDDD-----FAELLEAHRETGADGLVTVGIVPVEDPTGYGVIERDEDG 154

Query: 184 LIKAIVEKPAPEKAPSTNAVVGRYLLPNKIFR-CLESTSEGAGGEIQLTDAIAKLLDQDE 242
            +   VEKP  E A S  A  G Y+    IF   LE     A GE +LTDAI  LL++ +
Sbjct: 155 RVTRFVEKPDAETA-SNLANTGIYVFNPGIFDFLLELLEPLARGEPELTDAIPALLEEGK 213

Query: 243 KILSYEFKGT 252
            +++Y F+G+
Sbjct: 214 VVVAYLFRGS 223


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.318    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 9,016,927
Number of extensions: 474409
Number of successful extensions: 68734
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 1429
Number of HSP's successfully gapped: 305
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)