hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /home/genome/SCOP/1.73/Scop1.73.bin
Sequence file:            /home/genome/FASTA/gib_16628.fasta
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Query sequence: ABD99574.1
Accession:      [none]
Description:    lsal0 ABD99574.1 GIB00337CH01 "Hypothetical protein, phage associated"

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
0044201  His-Me finger endonucleases                     29.6    2.5e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
0044201    1/1     105   174 ..    39   105 .]    29.6  2.5e-08

Alignments of top-scoring domains:
0044201: domain 1 of 1, from 105 to 174: score 29.6, E = 2.5e-08
                   *->Ylvvglnld..gkgktylvhrlvalafignipeglvvdHidgnklnn
                      Y++v++ +d  +  k++  +  +++ ++g++p+g+++ +idg+k n 
  ABD99574.1   105    YTLVKVKRDgsKYEKWKPKQVHIWEQHNGPLPKGYIITFIDGDKSNL 151  

                   ridNLrwvtrsen.lrnakkrgl