# hmmscan :: search sequence(s) against a profile HMM database
# HMMER 3.0b2 (June 2009); http://hmmer.org/
# Copyright (C) 2009 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /home/niguts/usr08/shisakam/FASTA/gib_20050.fasta
# target HMM database: /home/niguts/usr08/shisakam/PFAM/ver24.0/Pfam-A.hmm
# sequence search space set to: 100000
# set reporting thresholds to: GA cutoffs
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: ABA58618.1 [L=690]
Description: noce0 ABA58618.1 GIB00281CH01 "Flagellar biosynthesis protein FlhA"
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.7e-273 909.9 0.2 6.6e-273 909.7 0.2 1.0 1 PF00771 FHIPEP family
------ inclusion threshold ------
0.71 12.0 6.3 0.52 12.4 2.7 2.0 1 PF05128 Domain of unknown function (DUF697)
7.3 9.1 0.5 44 6.5 0.0 2.5 1 PF03748 Flagellar basal body-associated protein FliL
11 8.6 0.0 23 7.5 0.0 1.5 1 PF00410 Ribosomal protein S8
13 7.5 0.0 29 6.4 0.0 1.5 1 PF06888 Putative Phosphatase
22 9.0 3.3 13 9.8 0.2 2.3 1 PF10550 Conantokin-G mollusc-toxin
27 7.2 0.1 78 5.7 0.1 1.7 1 PF04217 Protein of unknown function, DUF412
30 6.3 0.1 70 5.1 0.1 1.6 1 PF11984 Protein of unknown function (DUF3485)
37 4.5 0.0 54 3.9 0.0 1.1 1 PF09508 Lacto-N-biose phosphorylase
53 6.2 0.0 1.2e+02 5.0 0.0 1.6 1 PF02847 MA3 domain
1.2e+02 5.0 0.0 2.7e+02 3.9 0.0 1.5 1 PF04117 Mpv17 / PMP22 family
1.4e+02 4.5 4.6 35 6.4 0.6 1.9 1 PF05628 Borrelia membrane protein P13
1.4e+02 5.4 4.8 53 6.8 0.1 2.8 1 PF02656 Domain of unknown function DUF
1.7e+02 4.4 0.0 3.5e+02 3.4 0.0 1.5 1 PF04420 CHD5-like protein
2e+02 3.8 0.5 4.1e+02 2.8 0.3 1.4 1 PF06120 Tail length tape measure protein
2.7e+02 3.7 0.0 6.5e+02 2.4 0.0 1.6 1 PF05240 APOBEC-like C-terminal domain
3e+02 2.2 0.0 4.7e+02 1.6 0.0 1.2 1 PF05095 Protein of unknown function (DUF687)
3.4e+02 2.3 0.0 4.9e+02 1.8 0.0 1.1 1 PF00981 Rotavirus RNA-binding Protein 53 (NS53)
3.4e+02 3.6 0.1 7.8e+02 2.4 0.0 1.5 1 PF02671 Paired amphipathic helix repeat
3.5e+02 1.2 0.0 5.8e+02 0.5 0.0 1.2 1 PF05567 Neisseria PilC protein
4e+02 2.2 0.0 6.6e+02 1.5 0.0 1.2 1 PF06673 Lactococcus lactis bacteriophage major capsid prote
4.8e+02 2.6 0.0 9.4e+02 1.6 0.0 1.3 1 PF04808 Citrus tristeza virus (CTV) P23 protein
5e+02 2.6 3.8 1.4e+03 1.1 2.6 1.7 1 PF12606 Tumour necrosis factor receptor superfamily member
5.3e+02 2.4 0.0 7.8e+02 1.9 0.0 1.1 1 PF00128 Alpha amylase, catalytic domain
5.4e+02 3.3 0.0 1.7e+03 1.7 0.0 1.8 1 PF12040 Domain of unknown function (DUF3526)
5.5e+02 3.4 0.2 1.1e+03 2.5 0.2 1.3 1 PF01749 Importin beta binding domain
6.1e+02 1.9 0.0 1.1e+03 1.1 0.0 1.3 1 PF02384 N-6 DNA Methylase
7.3e+02 1.2 0.0 1.1e+03 0.6 0.0 1.1 1 PF00245 Alkaline phosphatase
1.1e+03 1.9 5.3 1.4e+02 4.7 0.3 2.0 1 PF03742 PetN
1.3e+03 1.6 0.2 4e+03 0.1 0.2 1.6 1 PF12522 Cytomegalovirus glycoprotein N terminal
1.6e+03 0.7 0.0 2.7e+03 -0.1 0.0 1.2 1 PF09777 Osteopetrosis-associated transmembrane protein 1 pr
2.5e+03 1.8 1.5 1e+04 -0.1 1.1 2.0 1 PF08259 Periviscerokinin family
Domain and alignment annotation for each model:
>> PF00771 FHIPEP family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 909.7 0.2 2.1e-276 6.6e-273 2 658 .] 27 682 .. 26 682 .. 0.99
Alignments for each domain:
== domain 1 score: 909.7 bits; conditional E-value: 2.1e-276
PF00771 2 ilamlilPlpalllDlllalnialsvlillvalyikkpldfsvFPslLLittLlRLaLnvastrliLlege...daaGkvieaFGefvvggnlvvGlvv 97
+lam++lPlpa+llDll+++ni+l++++ll +y+++pldfs+FP++LL++tL+RLaLnvastr++Lleg+ daaGkvi+aFGefv+ggn++vGlvv
ABA58618.1 27 MLAMMVLPLPAALLDLLFTFNISLALVVLLAGVYARRPLDFSSFPTILLLATLMRLALNVASTRVVLLEGHtgsDAAGKVIQAFGEFVIGGNYAVGLVV 125
79************************************************************************************************* PP
PF00771 98 FlilvivnfiVitkGaeRvaEVaARFtLDamPGKQmaIDaDLnaGlideeeAkkrReelekEadfyGamDGAsKFVkGDAiagiiilliNiigGlliGv 196
F+ilv++nf+V+tkGa+R++EV+ARFtLDamPGKQmaIDaDLnaGlid+eeA+ rRee+ +EadfyG+mDGA KFV+GDAiagi+illiN+ gGl++G+
ABA58618.1 126 FFILVLINFVVVTKGATRISEVSARFTLDAMPGKQMAIDADLNAGLIDQEEARLRREEVMQEADFYGSMDGAGKFVRGDAIAGILILLINVAGGLAVGL 224
*************************************************************************************************** PP
PF00771 197 lqhgmslgeaaetytlltiGDGLvsqiPaLliSvaagiivtrvseeenlgeeiveqllaspkalliaavlllllalvpglPklvflllaalllllayll 295
lqh++s++eaa++ytlltiGDGLv+qiP+L++S+aagi+vtrvs+ +++g++i+ ql+++pk l+++av+l ++l+pg+P+l+fl la+l+++ +++l
ABA58618.1 225 LQHDLSFSEAARNYTLLTIGDGLVAQIPSLVLSTAAGILVTRVSHAQDMGSQILAQLFKNPKSLAVVAVVLGSMGLIPGMPNLAFLGLALLCGFGVWWL 323
*************************************************************************************************** PP
PF00771 296 kkkkkeeekeeeeeekeeeeeeeeeeesveevlkvdplelelgyklielvdeeqggellerikairkklaeelGvvlpeirirdnlelkpneyriklkg 394
k++k +e +++ ++++e+ e s+e++++vdp+ le+gy+li+lvd++qgg+l+ rik++rkkl+++ G+++p+++irdnl+l+p +yri+l g
ABA58618.1 324 GKRQK----AEVAPTPPMAAPSETPELSWEDIPPVDPIGLEVGYRLIPLVDKTQGGQLMGRIKGVRKKLSQDWGFLIPPVHIRDNLNLAPIAYRITLFG 418
***94....4445555555678899************************************************************************** PP
PF00771 395 vevaegelkpdkllaidsgeekeelegeetkepafgleavwieeeekeeaekagytvvdpstvlathlsevlkknaaellgrqevqklldelekeapkl 493
v+v+e+e+ p++ +ai++g++ +++eg+++++pafglea+wie++++e+a+++gytvvd+ tv+athls++l+++a+ llgr+evqkll++l+k+apkl
ABA58618.1 419 VTVGEAEVFPEREMAINPGQVFGKVEGTPAQDPAFGLEALWIEPAQREQAQMHGYTVVDAGTVIATHLSQILQNHAHGLLGREEVQKLLENLAKTAPKL 517
*************************************************************************************************** PP
PF00771 494 veelvpkklslselqkvlqrLlkervsirdlrtilealaeaaekekdvelLteavRqaLarqivqklaeekgelkvitldpeleqllreslkqteegse 592
ve lvp+ l+ls +qkvlq+Ll+e+v+ird+rti+e+l+e++ +++d+++Lt+ +R+aL+r i+q + + ++el+vi ++p+leqll +sl++ +eg
ABA58618.1 518 VEGLVPEILPLSIVQKVLQQLLEEGVPIRDMRTIVESLTEHGLRSQDPAILTAIIRIALGRFIIQCFNGLEKELQVISIAPALEQLLLASLQTASEGGG 616
*************************************************************************************************** PP
PF00771 593 lalepelaekllesvkealekleakgekpvllvspdlRrllrkllerelpelaVlsyqEipeevei 658
l++ep laekl ++++ ++++ea+g++++llv+ lR+ l++++++++pel+Vlsy+Eipe++++
ABA58618.1 617 LNMEPGLAEKLHLTLRDSVQRQEAAGKPAILLVQGVLRPWLARFVRHAIPELKVLSYNEIPEDKQV 682
**************************************************************9875 PP
>> PF05128 Domain of unknown function (DUF697)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 2.7 0.00017 0.52 34 121 .. 29 117 .. 26 149 .. 0.81
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 0.00017
PF05128 34 AlvvavsPlalvDllavaavnlqmirelaklYgielgyegaqkLarsvlknlaglGlvelgtdl.lkqllslnlatklsaraaQGvvag 121
A++v+ P al+Dll++ + l++++ la +Y ++ ++ + +++ + + v+ + + l++ ++++ a+k+++++++ v++g
ABA58618.1 29 AMMVLPLPAALLDLLFTFNISLALVVLLAGVYARRPLDFSSFPTILLLATLMRLALNVASTRVVlLEGHTGSDAAGKVIQAFGEFVIGG 117
8899999*************************998777776666666666665555554444334899999999999999998877776 PP
>> PF03748 Flagellar basal body-associated protein FliL
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.5 0.0 0.014 44 10 48 .. 308 342 .. 304 370 .. 0.66
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.014
PF03748 10 lllllvvgggggvffllsgkqeaeqaaaaeaeeaaaaap 48
+ l l++ g+gv++l+++++++ a++++ aa+++
ABA58618.1 308 AFLGLALLCGFGVWWLGKRQKAEV----APTPPMAAPSE 342
567788889999*****9976663....33333333222 PP
>> PF00410 Ribosomal protein S8
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.5 0.0 0.0072 23 97 128 .. 250 281 .. 235 282 .. 0.89
Alignments for each domain:
== domain 1 score: 7.5 bits; conditional E-value: 0.0072
PF00410 97 glgililsTskGvmtdreArkkkvGGevlckv 128
+++ l+lsT +G++ r + + +G ++l+++
ABA58618.1 250 QIPSLVLSTAAGILVTRVSHAQDMGSQILAQL 281
67789************************987 PP
>> PF06888 Putative Phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.4 0.0 0.0094 29 31 73 .. 516 558 .. 502 578 .. 0.83
Alignments for each domain:
== domain 1 score: 6.4 bits; conditional E-value: 0.0094
PF06888 31 eelretlrkglwnelmdrvlkelheqgvseadikkvlrsipls 73
+ ++ +++ l + +++vl++l e+gv ++d++++++s++ +
ABA58618.1 516 KLVEGLVPEILPLSIVQKVLQQLLEEGVPIRDMRTIVESLTEH 558
555666777777899************************9876 PP
>> PF10550 Conantokin-G mollusc-toxin
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 9.8 0.2 0.0041 13 1 13 [. 499 511 .. 499 512 .. 0.91
Alignments for each domain:
== domain 1 score: 9.8 bits; conditional E-value: 0.0041
--CCCCCHHHHHT CS
PF10550 1 GEEElqkMaeeLi 13
G EE+qk +e+L+
ABA58618.1 499 GREEVQKLLENLA 511
67**********7 PP
>> PF04217 Protein of unknown function, DUF412
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.7 0.1 0.025 78 77 91 .. 317 331 .. 286 338 .. 0.74
Alignments for each domain:
== domain 1 score: 5.7 bits; conditional E-value: 0.025
PF04217 77 lqGlyWLGkRantpL 91
G++WLGkR + +
ABA58618.1 317 GFGVWWLGKRQKAEV 331
469*******98765 PP
>> PF11984 Protein of unknown function (DUF3485)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.1 0.1 0.022 70 3 39 .. 307 343 .. 305 352 .. 0.88
Alignments for each domain:
== domain 1 score: 5.1 bits; conditional E-value: 0.022
PF11984 3 llalalllllaaaalllrplretaapprdplaiiple 39
l++l+l+ll ++++++l ++++ ++p++p a++ ++
ABA58618.1 307 LAFLGLALLCGFGVWWLGKRQKAEVAPTPPMAAPSET 343
688999999*********************9998776 PP
>> PF09508 Lacto-N-biose phosphorylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.9 0.0 0.017 54 424 472 .. 633 678 .. 626 680 .. 0.83
Alignments for each domain:
== domain 1 score: 3.9 bits; conditional E-value: 0.017
PF09508 424 entkgekalalklkvavlnsWGklrsWqasqvahalyykqvysyvgile 472
+++++++a k a+l G lr W a+ v+ha+ +v sy +i e
ABA58618.1 633 DSVQRQEAA---GKPAILLVQGVLRPWLARFVRHAIPELKVLSYNEIPE 678
445555544...7889999***********************9998866 PP
>> PF02847 MA3 domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.0 0.0 0.038 1.2e+02 2 46 .. 532 576 .. 531 582 .. 0.92
Alignments for each domain:
== domain 1 score: 5.0 bits; conditional E-value: 0.038
PF02847 2 krkiflileeylssgdyeeavskleeLklpkqhheivkillecal 46
++ + +lee + ++d++ v++l+e +l +q + i+ ++ +al
ABA58618.1 532 QKVLQQLLEEGVPIRDMRTIVESLTEHGLRSQDPAILTAIIRIAL 576
5677899**********************************9988 PP
>> PF04117 Mpv17 / PMP22 family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.9 0.0 0.085 2.7e+02 3 43 .. 93 138 .. 91 142 .. 0.88
Alignments for each domain:
== domain 1 score: 3.9 bits; conditional E-value: 0.085
PF04117 3 llegksleeikeklkekflptlk.....anwmvWpavqlinFafvP 43
lleg++ +++ k+ + f + ++++v+ + linF +v
ABA58618.1 93 LLEGHTGSDAAGKVIQAFGEFVIggnyaVGLVVFFILVLINFVVVT 138
7899999999999999999998888888**************9996 PP
>> PF05628 Borrelia membrane protein P13
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.4 0.6 0.011 35 57 82 .. 196 221 .. 190 265 .. 0.76
Alignments for each domain:
== domain 1 score: 6.4 bits; conditional E-value: 0.011
PF05628 57 GiGsfvqGdyiGGgavlGfqllGlil 82
G G fv+Gd i G ++l ++ G+
ABA58618.1 196 GAGKFVRGDAIAGILILLINVAGGLA 221
88*******************99743 PP
>> PF02656 Domain of unknown function DUF
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.8 0.1 0.017 53 21 66 .. 258 303 .. 253 306 .. 0.89
Alignments for each domain:
== domain 1 score: 6.8 bits; conditional E-value: 0.017
PF02656 21 aalGiallqlfrldsssssatlrlrslgkplgltfiglailvllyg 66
a Gi+++++++ + ++s+ ++l ++ k l+++ ++l+ + l+ g
ABA58618.1 258 TAAGILVTRVSHAQDMGSQILAQLFKNPKSLAVVAVVLGSMGLIPG 303
589***********************************98877755 PP
>> PF04420 CHD5-like protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.4 0.0 0.11 3.5e+02 1 38 [. 123 160 .. 123 196 .. 0.84
Alignments for each domain:
== domain 1 score: 3.4 bits; conditional E-value: 0.11
PF04420 1 llaiflvlvlkfLvntigkstiekllwklylkvptsks 38
l++ f++++++f+v t g+ i+++ ++ l + k+
ABA58618.1 123 LVVFFILVLINFVVVTKGATRISEVSARFTLDAMPGKQ 160
56788899999***************999988766444 PP
>> PF06120 Tail length tape measure protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.8 0.3 0.13 4.1e+02 12 33 .. 292 312 .. 284 332 .. 0.76
Alignments for each domain:
== domain 1 score: 2.8 bits; conditional E-value: 0.13
PF06120 12 tllktGatGlvGGlPGllmlGa 33
+ + G++Gl+ G+P l lG
ABA58618.1 292 A-VVLGSMGLIPGMPNLAFLGL 312
3.55699********9988874 PP
>> PF05240 APOBEC-like C-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.4 0.0 0.21 6.5e+02 5 22 .. 532 549 .. 529 550 .. 0.90
Alignments for each domain:
== domain 1 score: 2.4 bits; conditional E-value: 0.21
HHHHHHHHH---EEEE-- CS
PF05240 5 qegLrkLrsagvqvriMk 22
q+ L++L ++gv++r M+
ABA58618.1 532 QKVLQQLLEEGVPIRDMR 549
899***********9997 PP
>> PF05095 Protein of unknown function (DUF687)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 0.0 0.15 4.7e+02 468 526 .. 78 136 .. 51 144 .. 0.82
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.15
PF05095 468 eacrlnrtsnatstvipentttvydgdelrnaseawqtGdvlaisqtislilcllvlli 526
++rl + t v+ e++t+ ++ +a+ +++ G +a++ ++ +il l+ +++
ABA58618.1 78 TLMRLALNVASTRVVLLEGHTGSDAAGKVIQAFGEFVIGGNYAVGLVVFFILVLINFVV 136
555655555667778889999988888999999******************99998776 PP
>> PF00981 Rotavirus RNA-binding Protein 53 (NS53)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.8 0.0 0.16 4.9e+02 417 457 .. 511 551 .. 488 560 .. 0.86
Alignments for each domain:
== domain 1 score: 1.8 bits; conditional E-value: 0.16
PF00981 417 ynvikqilegevPkiltlkdvksilkaiiedWfdirklrel 457
+++ + +eg vP+il l+ v+++l+ ++e+ + ir +r++
ABA58618.1 511 AKTAPKLVEGLVPEILPLSIVQKVLQQLLEEGVPIRDMRTI 551
55555678888**************************9976 PP
>> PF02671 Paired amphipathic helix repeat
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.4 0.0 0.25 7.8e+02 9 42 .. 488 521 .. 485 522 .. 0.93
Alignments for each domain:
== domain 1 score: 2.4 bits; conditional E-value: 0.25
PF02671 9 eiLhdyskeiisrtelyqeVadLlgghpdLleeF 42
+iL+ + r+e++ + +L + p L+e++
ABA58618.1 488 QILQNHAHGLLGREEVQKLLENLAKTAPKLVEGL 521
89999999********************999985 PP
>> PF05567 Neisseria PilC protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.5 0.0 0.19 5.8e+02 338 367 .. 447 476 .. 435 516 .. 0.75
Alignments for each domain:
== domain 1 score: 0.5 bits; conditional E-value: 0.19
PF05567 338 kapspaltapalwfgpvqngkvqmysasvs 367
a+ pa+ alw+ p+q ++qm+ +v
ABA58618.1 447 PAQDPAFGLEALWIEPAQREQAQMHGYTVV 476
5789********************987775 PP
>> PF06673 Lactococcus lactis bacteriophage major capsid protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.5 0.0 0.21 6.6e+02 6 31 .. 531 556 .. 527 563 .. 0.90
Alignments for each domain:
== domain 1 score: 1.5 bits; conditional E-value: 0.21
PF06673 6 tqeimkqaieagvkvreleakveeln 31
q++++q +e gv +r++ + ve l
ABA58618.1 531 VQKVLQQLLEEGVPIRDMRTIVESLT 556
6999*******************986 PP
>> PF04808 Citrus tristeza virus (CTV) P23 protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 0.0 0.3 9.4e+02 142 162 .. 325 345 .. 318 348 .. 0.90
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.3
PF04808 142 erektrlarrhpmrspeetpe 162
+r+k+ +a pm +p etpe
ABA58618.1 325 KRQKAEVAPTPPMAAPSETPE 345
799*****************9 PP
>> PF12606 Tumour necrosis factor receptor superfamily member 19
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.1 2.6 0.44 1.4e+03 8 22 .. 124 138 .. 119 139 .. 0.83
Alignments for each domain:
== domain 1 score: 1.1 bits; conditional E-value: 0.44
PF12606 8 siffvmglLgllict 22
+ff+++l+ ++++t
ABA58618.1 124 VVFFILVLINFVVVT 138
489999999999997 PP
>> PF00128 Alpha amylase, catalytic domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.9 0.0 0.25 7.8e+02 16 40 .. 453 477 .. 451 483 .. 0.90
Alignments for each domain:
== domain 1 score: 1.9 bits; conditional E-value: 0.25
----EEEES--EECCGTTCGGSECE CS
PF00128 16 lGvtaiwlsPifespqsyhgYditd 40
G +a+w+ P +++ + hgY + d
ABA58618.1 453 FGLEALWIEPAQREQAQMHGYTVVD 477
5899*********999*****9877 PP
>> PF12040 Domain of unknown function (DUF3526)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.7 0.0 0.55 1.7e+03 76 97 .. 385 406 .. 380 408 .. 0.89
Alignments for each domain:
== domain 1 score: 1.7 bits; conditional E-value: 0.55
PF12040 76 qqrlarrvgllsPvlalqellm 97
+++l++ +g+l P++++++ l+
ABA58618.1 385 RKKLSQDWGFLIPPVHIRDNLN 406
68899************98775 PP
>> PF01749 Importin beta binding domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.5 0.2 0.35 1.1e+03 17 31 .. 170 185 .. 168 187 .. 0.83
Alignments for each domain:
== domain 1 score: 2.5 bits; conditional E-value: 0.35
-.--HHHHHHHCCCCH CS
PF01749 17 g.vdaeelRrrReeee 31
g +d+ee+R rRee++
ABA58618.1 170 GlIDQEEARLRREEVM 185
5589**********86 PP
>> PF02384 N-6 DNA Methylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.1 0.0 0.34 1.1e+03 239 282 .. 158 201 .. 132 209 .. 0.86
Alignments for each domain:
== domain 1 score: 1.1 bits; conditional E-value: 0.34
PF02384 239 kevlfidaseefkkkdrkknklteediekivdtykekedvaefa 282
++ + ida ++ d+++ +l+ e++ + +d y++ ++ +f
ABA58618.1 158 GKQMAIDADLNAGLIDQEEARLRREEVMQEADFYGSMDGAGKFV 201
5667899****************************998887775 PP
>> PF00245 Alkaline phosphatase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.6 0.0 0.36 1.1e+03 188 241 .. 466 519 .. 459 529 .. 0.90
Alignments for each domain:
== domain 1 score: 0.6 bits; conditional E-value: 0.36
HHHCH---EE--SHHHHHHHHH-TTSSSEE----------CCCTSTTTS--HHH CS
PF00245 188 eeakkagyqyvsdrkeLlkakeensvkplLGLFadgdlkvelerdekeePsLke 241
e+a+ +gy +v+ + ++ + ++ +++ GL +++++ le+ k+ P+L e
ABA58618.1 466 EQAQMHGYTVVDAGTVIATHLSQILQNHAHGLLGREEVQKLLENLAKTAPKLVE 519
78999******9999998888888999************************987 PP
>> PF03742 PetN
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.7 0.3 0.046 1.4e+02 11 23 .. 42 54 .. 40 54 .. 0.86
Alignments for each domain:
== domain 1 score: 4.7 bits; conditional E-value: 0.046
PF03742 11 lmavFTfSlALVV 23
l+ +F SlALVV
ABA58618.1 42 LLFTFNISLALVV 54
5668999*****9 PP
>> PF12522 Cytomegalovirus glycoprotein N terminal
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.1 0.2 1.3 4e+03 4 11 .. 254 261 .. 254 261 .. 0.95
Alignments for each domain:
== domain 1 score: 0.1 bits; conditional E-value: 1.3
PF12522 4 LVLSVaag 11
LVLS aag
ABA58618.1 254 LVLSTAAG 261
9******8 PP
>> PF09777 Osteopetrosis-associated transmembrane protein 1 precursor
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.1 0.0 0.87 2.7e+03 2 34 .. 504 536 .. 503 547 .. 0.91
Alignments for each domain:
== domain 1 score: -0.1 bits; conditional E-value: 0.87
PF09777 2 eklleefakaqaklvaclvtkarPvklCqkcve 34
+klle++ak+ klv+ lv + P + qk ++
ABA58618.1 504 QKLLENLAKTAPKLVEGLVPEILPLSIVQKVLQ 536
689**********************99998776 PP
>> PF08259 Periviscerokinin family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.1 1.1 3.3 1e+04 1 7 [. 296 302 .. 296 305 .. 0.86
Alignments for each domain:
== domain 1 score: -0.1 bits; conditional E-value: 3.3
PF08259 1 gSSGLIp 7
gS GLIp
ABA58618.1 296 GSMGLIP 302
899***9 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (690 residues)
Target model(s): 11912 (2158902 nodes)
Passed MSV filter: 357 (0.0299698); expected 238.2 (0.02)
Passed bias filter: 214 (0.0179651); expected 238.2 (0.02)
Passed Vit filter: 39 (0.00327401); expected 11.9 (0.001)
Passed Fwd filter: 39 (0.00327401); expected 0.1 (1e-05)
Initial search space (Z): 100000 [as set by --Z on cmdline]
Domain search space (domZ): 32 [number of targets reported over threshold]
# CPU time: 0.44u 0.04s 00:00:00.48 Elapsed: 00:00:01
# Mc/sec: 3385.55
//