hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /home/genome/SCOP/1.73/Scop1.73.bin
Sequence file:            /home/genome/FASTA/gib_20656.fasta
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Query sequence: AAL64972.1
Accession:      [none]
Description:    paer1 AAL64972.1 GIB00076CH01 "resolvase, conjectural"

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
0038061  Resolvase-like                                  97.3    3.2e-27   1
0052924  Resolvase-like                                  95.1    3.9e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
0038061    1/1       2   157 ..     1   140 []    97.3  3.2e-27
0052924    1/1       2   157 ..     1   140 []    95.1  3.9e-26

Alignments of top-scoring domains:
0038061: domain 1 of 1, from 2 to 157: score 97.3, E = 3.2e-27
                   *->mrvigYaRvStddqslerQlealeay....glevvkiyvd.gvSGtk
                        ++ Y+RvSt++q+ e+Q+ +le+++ + g+ +vk+yvd+gvSG++
  AAL64972.1     2    ITAVTYIRVSTEEQDPENQRVFLERWagerGIYIVKHYVDvGVSGAT 48   

                   l..dRpglqrlledlreg....dvlvvtkldRLgrslldllellelllek
                      +Rp+++++ +++++ +    vl+v++++RL rs  +l++ll++++++
  AAL64972.1    49 EpwERPAFRQMASEVDKLeprpRVLLVYEISRLVRSFQELFTLLDVVENR 98   

                   .gvrlvsldegi....dtstpigrllldilaalaeferelisertragla
                    g+ +vs++e +++ ++++  + ++l  +la++a +ere+i++rt+ +l+
  AAL64972.1    99 lGLVVVSASEREqalqNLDGVYRQFLRAVLAFVATMEREFIRQRTKTALE 148  

                   aakaeGkylmrvagYaRvStddqslerQlealkey....glevvkiyvD.gvsgtn
                      + ++ Y+RvSt++q+ e+Q+ +l++++ + g+ +vk+yvD+gvsg++
  AAL64972.1     2    ITAVTYIRVSTEEQDPENQRVFLERWagerGIYIVKHYVDvGVSGAT 48   

                   l..dRpglqrlledlrag....dvlvvtkldRlgRnlldllelle.llke
                      +Rp+++++ + + + +    vl+v++++Rl R++ +l++ll+++  +
  AAL64972.1    49 EpwERPAFRQMASEVDKLeprpRVLLVYEISRLVRSFQELFTLLDvVENR 98   

                   kgvrlvsldeg....idtstpagellltilaalaeferelisertkagla
                   +g  +vs++e +++  ++++ + ++l  +la++a +ere+i++rtk +l+
  AAL64972.1    99 LGLVVVSASEReqalQNLDGVYRQFLRAVLAFVATMEREFIRQRTKTALE 148  

                   aakakGkyl