RPS-BLAST 2.2.16 [Mar-25-2007]

Database: 95pdb09Oct16_0000; 95pdb09Oct16_0001; 95pdb09Oct16_0002;
95pdb09Oct16_0003 
           66,450 sequences; 15,983,541 total letters

Searching..................................................done

Query= AAZ22049.1 pubi0 folE GIB00256CH01 "GTP cyclohydrolase I"
         (202 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1a9cA [d.96.1] GTP CYCLOHYDROLASE I                                   195   7e-53
1a8rA [d.96.1] GTP CYCLOHYDROLASE I                                   141   2e-36
3bp1D [x.x.x] NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE        103   6e-25
3bp1B [x.x.x] NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE         91   3e-21

>1a9cA [d.96.1] GTP CYCLOHYDROLASE I
          Length = 221

 Score =  195 bits (498), Expect = 7e-53
 Identities = 63/195 (32%), Positives = 97/195 (49%)

Query: 8   DSKILDTKKVSDKEAEEAFKTILTWMGEDPSREGLLETPKRVVKAFKEYFGGYTEDAEKI 67
                   +            I+  +  D + + L+ETP R+ K + +      + A   
Sbjct: 25  PPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFP 84

Query: 68  LEKTFGDVEGYDDMVVEKNISVSSHCEHHMAPIVGTAHVAYIPNERVVGLSKLARVVEVF 127
                 +    D+MV  ++I+++S  EHH   I G A VAYIP + V+GLSK+ R+V+ F
Sbjct: 85  KITLIENKMKVDEMVTVRDITLTSTSEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFF 144

Query: 128 SKRLQTQERLTMQVAQALMTSLDAKGVAVTIDAAHQCMTMRGIKKENATTVTNYFLGEFK 187
           ++R Q QERLT Q+  AL T L    VAV+IDA H C+  RGI+   + T T    G FK
Sbjct: 145 AQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFK 204

Query: 188 KDLSVQNRYLRFISK 202
              + ++ +LR +  
Sbjct: 205 SSQNTRHEFLRAVRH 219


>1a8rA [d.96.1] GTP CYCLOHYDROLASE I
          Length = 221

 Score =  141 bits (356), Expect = 2e-36
 Identities = 63/180 (35%), Positives = 96/180 (53%)

Query: 23  EEAFKTILTWMGEDPSREGLLETPKRVVKAFKEYFGGYTEDAEKILEKTFGDVEGYDDMV 82
                 I+  +  D + + L+ETP R+ K + +      + A         +    D+MV
Sbjct: 40  AGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMV 99

Query: 83  VEKNISVSSHCEHHMAPIVGTAHVAYIPNERVVGLSKLARVVEVFSKRLQTQERLTMQVA 142
             ++I+++S CE H   I G A VAYIP + V+GLSK+ R+V+ F++R Q QERLT Q+ 
Sbjct: 100 TVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL 159

Query: 143 QALMTSLDAKGVAVTIDAAHQCMTMRGIKKENATTVTNYFLGEFKKDLSVQNRYLRFISK 202
            AL T L    VAV+IDA H C+  RGI+   + T T    G FK   + ++ +LR +  
Sbjct: 160 IALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRH 219


>3bp1D [x.x.x] NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE
          Length = 252

 Score =  103 bits (257), Expect = 6e-25
 Identities = 18/172 (10%), Positives = 41/172 (23%), Gaps = 24/172 (13%)

Query: 21  EAEEAFKTILTWMGEDPSREGLLETPKRVVKAFKEYFGGYTE--------DAEKILEKTF 72
               ++  + T +  D S          V    +                D E    +  
Sbjct: 82  TRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTQGECIDDQDIEIANYEFD 141

Query: 73  GDVEGYDDMVVEKNISVSSHCEHHMAPIVGTAHVAYIPNERVVGLSKLARVVEVFSKRLQ 132
             +        E +  + SH      P  G+  +AY           L R +  F +  +
Sbjct: 142 DALLQGAAQGEEVSEVLHSHLLKSNQPDWGSVEIAYHGA---KNREALLRYLVSFREHNE 198

Query: 133 TQERLTMQVAQALMTSLDAKGVAVTID------------AAHQCMTMRGIKK 172
             E+   ++   +      + + V                +         ++
Sbjct: 199 FHEQCVERIFTDIRY-CQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQR 249


>3bp1B [x.x.x] NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE
          Length = 250

 Score = 91.0 bits (225), Expect = 3e-21
 Identities = 18/172 (10%), Positives = 44/172 (25%), Gaps = 15/172 (8%)

Query: 13  DTKKVSDKEAEEAFKTILTWMGEDPSREGLLETPKRVVKAFKEYFGGY-TEDAEKILEKT 71
            T+  S  E +      L+    +     +    +   +           +D E    + 
Sbjct: 79  QTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTQGECIDDQDIEIANYEF 138

Query: 72  FGDVEGYDDMVVEKNISVSSHCEHHMAPIVGTAHVAYIPNERVVGLSKLARVVEVFSKRL 131
              +        E +  + SH      P  G+  +AY           L R +  F +  
Sbjct: 139 DDALLQGAAQGEEVSEVLHSHLLKSNQPDWGSVEIAYHGA---KNREALLRYLVSFREHN 195

Query: 132 QTQERLTMQVAQALMTSLDAK-----------GVAVTIDAAHQCMTMRGIKK 172
           +  E+   ++   +                  G+ +    +         ++
Sbjct: 196 EFHEQCVERIFTDIRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQR 247


  Database: 95pdb09Oct16_0000
    Posted date:  Oct 27, 2009  4:27 PM
  Number of letters in database: 15,983,541
  Number of sequences in database:  66,450
  
Lambda     K      H
   0.333    0.145    0.477 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 66450
Number of Hits to DB: 20,370,238
Number of extensions: 1275700
Number of successful extensions: 14641
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 6635
Number of HSP's successfully gapped: 407
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)