RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= AAZ21647.1 pubi0 AAZ21647.1 GIB00256CH01 "probable MFS
transporter (Major Facilitator Supe.."
         (406 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF07690 MFS_1 "Major Facilitator Superfamily"                          43   1e-06

>PF07690 MFS_1 "Major Facilitator Superfamily"
          Length = 347

 Score = 42.6 bits (100), Expect = 1e-06
 Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 11/241 (4%)

Query: 43  DLDISITQSGLAIGIQMLMWGLTGPIFGAIADKYGGHKAICLAFVFYILGIYFLYAGPNT 102
           DL +S +Q GL +   +L + L  P  G +AD++G  + + L  + + LG   L    N+
Sbjct: 26  DLGLSPSQVGLLLSAFLLGYALGSPPAGPLADRFGRRRVLLLGLLLFALGSLLLAFASNS 85

Query: 103 GIFFQIDXXXXXXXXXXXTAISIPMSIVGKHFPLSNRTIAMSIVTAVGSLGYFISPLYTS 162
            +                 A S   +++   FP   R  A+ I +A G LG  + PL   
Sbjct: 86  WLLLVARFLQGLGAGGLFPAAS---ALIADWFPPEERGRALGIFSAGGGLGAALGPLLGG 142

Query: 163 YSLIKNGWVDTXXXXXXXXXXXXXXXXXV--RSPSAAQSIEKPNN-----QSAIEAFKEA 215
                 GW                    +    P  A+ +           S +   K  
Sbjct: 143 LLAESLGWRWAFLILAILGLLALLLALLLLPEPPPEAKRLSPAEKLLERAPSPLLPLKLL 202

Query: 216 FKNKSYILLVSGFFVCGFHITLVGTHVPKYVID-RGLESWTAAAILSLIGLFNIFGSLLS 274
            KN    LL+   F+ GF    + T +P Y+ +  G  +  A  +L+L GL    GSLL 
Sbjct: 203 LKNPVLWLLLLALFLFGFGFYGLLTFLPLYLQEVLGFSALQAGLLLALGGLVGAIGSLLG 262

Query: 275 G 275
           G
Sbjct: 263 G 263


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.318    0.139    0.390 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 11,567,399
Number of extensions: 606583
Number of successful extensions: 88798
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 1617
Number of HSP's successfully gapped: 241
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)