RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= AAZ22059.1 pubi0 AAZ22059.1 GIB00256CH01 "Putative
NADPH-quinone reductase"
         (189 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF02525 Flavodoxin_2 "Flavodoxin-like fold"                            80   3e-18

>PF02525 Flavodoxin_2 "Flavodoxin-like fold"
          Length = 193

 Score = 79.7 bits (196), Expect = 3e-18
 Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 17/169 (10%)

Query: 3   KIFLLYGHYN-EKSFNAAIRDTFIKTAEKNGNTVDCVDLYKDKFNPVFAGE--------Q 53
           K+ ++Y H   E SF++A+ D F++  ++ G+ V   DLY + F+PV            Q
Sbjct: 2   KVLIIYAHPRPEGSFSSALNDAFVEALKEAGHEVTVRDLYAE-FDPVLDAADLAALTYPQ 60

Query: 54  AGEDVLDHRRRIEKCDIIVLIAPIWNFRMPAIVEGWIDKVLSPPWAYTFKKLVGNYGYPM 113
              DV   +  +   D+IV   P+W F +PAI++GWID+V +  +A+ + +     G   
Sbjct: 61  GPADVESEQEELLWADVIVFQFPLWWFSVPAILKGWIDRVFTAGFAFKYTE----NGPSG 116

Query: 114 GNLKDKKAIIFCTYGSPRLAVTTFFLNLPIRRL---KRGVFHMCGIYNI 159
           G LK KKA++  T G P  A        P+  L    RG+   CGI ++
Sbjct: 117 GLLKGKKALLIVTTGGPEEAYGEGLPGAPMDDLLPPLRGILGFCGITDL 165


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.313    0.131    0.341 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 13,628,524
Number of extensions: 780209
Number of successful extensions: 95433
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 1984
Number of HSP's successfully gapped: 280
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)