RPS-BLAST 2.2.16 [Mar-25-2007]

Database: 40scop73nmM 
           9549 sequences; 1,678,726 total letters

Searching..................................................done

Query= AAZ21850.1 pubi0 ribA GIB00256CH01 "GTP cyclohydrolase II
/3,4-dihydroxy-2-butanone .."
         (366 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1g57A [d.115.1.2] 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE       259   4e-72
1pvwA [d.115.1.2] 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE       118   9e-30
2bz0A1 [c.144.1.1] GTP CYCLOHYDROLASE II A:1 -- 174                    79   1e-17

>1g57A [d.115.1.2] 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE
          Length = 205

 Score =  259 bits (664), Expect = 4e-72
 Identities = 76/197 (38%), Positives = 119/197 (60%), Gaps = 4/197 (2%)

Query: 6   YASIESIINIAKKGGMFILVDDEKRENEGDLIISTTDSSAKNINFMAKYGRGLICLALDS 65
           +  +E+ +   ++G   +++D    ENEGD+I      + + +    ++G G++CL +  
Sbjct: 9   FERVENALAALREGRGVMVLD----ENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 64

Query: 66  VQAKRLNLSLMSPINQSRNKTAFTISIEAKKGITTGISAKDRXXXXXXXXXXXXXXXDIV 125
            + K+L+L +M   N S   T FT++IEA +G+TTG+SA DR               D+ 
Sbjct: 65  DRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLN 124

Query: 126 SPGHVFPIIAKDGGVLVRAGHTEASVDISKLAKKNNSAVICEIMNEDGTMAKGQDLFDFA 185
            PGHVFP+ A+ GGVL R GHTEA++D+  LA    + V+CE+ N+DGTMA+  +  +FA
Sbjct: 125 RPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFA 184

Query: 186 NKHNLKIGKIEDLIAYR 202
           NKHN+ +  IEDL+AYR
Sbjct: 185 NKHNMALVTIEDLVAYR 201


>1pvwA [d.115.1.2] 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE
          Length = 219

 Score =  118 bits (297), Expect = 9e-30
 Identities = 61/218 (27%), Positives = 97/218 (44%), Gaps = 25/218 (11%)

Query: 8   SIESIINIAKKGGMFILVDDEKRENEGDLIISTTDSSAKNINFMAKYGRGLICLALDSVQ 67
           ++E  I   KKG + ++ D ++RE E D+++++   + ++I  M K   GLIC AL    
Sbjct: 2   NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDI 61

Query: 68  AKRLNLSLMSPI------------------NQSRNKTAFTISIEAKKGITTGISAKDRXX 109
             +L +  M  I                       K++F+I+I   +   TGI+  DR  
Sbjct: 62  CNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITI-NHRKTFTGITDNDRAF 120

Query: 110 XXXXXXXXXXXXX------DIVSPGHVFPIIAKDGGVLVRAGHTEASVDISKLAKKNNSA 163
                              +  SPGHV  + A +G V  R GHTE +V +++LA      
Sbjct: 121 TIKKLAELVKEGRFNDFGKEFRSPGHVTLLRAAEGLVKNRQGHTEMTVALAELANLVPIT 180

Query: 164 VICEIMNEDGTMAKGQDLFDFANKHNLKIGKIEDLIAY 201
            ICE+M +DG      +   +A KHNL     E++I Y
Sbjct: 181 TICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 218


>2bz0A1 [c.144.1.1] GTP CYCLOHYDROLASE II A:1 -- 174
          Length = 168

 Score = 78.7 bits (194), Expect = 1e-17
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 12/151 (7%)

Query: 225 KIRIYENLLDGSEHFALIKGNIKKGIIPRVRVISSNVVQNYLI--NQQLPNSFDKTLNYF 282
            +  +E L  G +H AL+ G+I        RV S  +  + L           +  L   
Sbjct: 19  LMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCGFQLEAALTQI 78

Query: 283 KKFNNCVLVFI-KDTNLKSVTQTLKDYKNKNFYKKGNDKLI------RNYGIGAQIIKDL 335
            +    +L++  ++     +   ++ Y       +G D +       R++ + A + K L
Sbjct: 79  AEEGRGILLYHRQEGRNIGLLNKIRAY---ALQDQGYDTVEGFAADERDFTLCADMFKLL 135

Query: 336 KIKNMILITKSLKKVIGLEGYDIKITKQEII 366
            +  + L+T + KKV  L    I I ++  +
Sbjct: 136 GVNEVRLLTNNPKKVEILTEAGINIVERVPL 166


  Database: 40scop73nmM
    Posted date:  Nov 2, 2009 11:39 AM
  Number of letters in database: 1,678,726
  Number of sequences in database:  9549
  
Lambda     K      H
   0.315    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9549
Number of Hits to DB: 10,645,699
Number of extensions: 698995
Number of successful extensions: 2618
Number of sequences better than 1.0e-03: 9
Number of HSP's gapped: 2487
Number of HSP's successfully gapped: 99
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)