RPS-BLAST 2.2.16 [Mar-25-2007]

Database: 40scop73nmM 
           9549 sequences; 1,678,726 total letters

Searching..................................................done

Query= AAZ22049.1 pubi0 folE GIB00256CH01 "GTP cyclohydrolase I"
         (202 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1a8rA [d.96.1.1] GTP CYCLOHYDROLASE I                                 228   4e-63
1g59A2 [c.26.1.1] GLUTAMYL-TRNA SYNTHETASE A:1 -- 305                  37   2e-05

>1a8rA [d.96.1.1] GTP CYCLOHYDROLASE I
          Length = 221

 Score =  228 bits (583), Expect = 4e-63
 Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 2/188 (1%)

Query: 14  TKKVSDKEAEEAFKTILTWMGEDPSREGLLETPKRVVKAF-KEYFGGYTEDAEKILEKTF 72
             +            I+  +  D + + L+ETP R+ K +  E F G        +    
Sbjct: 31  DNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKI-TLI 89

Query: 73  GDVEGYDDMVVEKNISVSSHCEHHMAPIVGTAHVAYIPNERVVGLSKLARVVEVFSKRLQ 132
            +    D+MV  ++I+++S CE H   I G A VAYIP + V+GLSK+ R+V+ F++R Q
Sbjct: 90  ENKMKVDEMVTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQ 149

Query: 133 TQERLTMQVAQALMTSLDAKGVAVTIDAAHQCMTMRGIKKENATTVTNYFLGEFKKDLSV 192
            QERLT Q+  AL T L    VAV+IDA H C+  RGI+   + T T    G FK   + 
Sbjct: 150 VQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNT 209

Query: 193 QNRYLRFI 200
           ++ +LR +
Sbjct: 210 RHEFLRAV 217


>1g59A2 [c.26.1.1] GLUTAMYL-TRNA SYNTHETASE A:1 -- 305
          Length = 305

 Score = 36.8 bits (85), Expect = 2e-05
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 5  EDTDSKILDTKKVSDKEAEEAFKTILTWMGEDPSREGLLETPKRVVKAFKEYFGGYTEDA 64
          EDTD      +      AEE     L W+G        +  P    +   E    Y + A
Sbjct: 41 EDTD------RARYVPGAEERILAALKWLGLSYDEGPDVAAPTGPYRQS-ERLPLYQKYA 93

Query: 65 EKILEK 70
          E++L++
Sbjct: 94 EELLKR 99


  Database: 40scop73nmM
    Posted date:  Nov 2, 2009 11:39 AM
  Number of letters in database: 1,678,726
  Number of sequences in database:  9549
  
Lambda     K      H
   0.333    0.145    0.477 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9549
Number of Hits to DB: 11,968,225
Number of extensions: 859212
Number of successful extensions: 3894
Number of sequences better than 1.0e-03: 7
Number of HSP's gapped: 3762
Number of HSP's successfully gapped: 212
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)