BLASTP 2.2.16 [Mar-25-2007]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ABF08451.1 rmet0 ABF08451.1 GIB00349CH01 "transcriptional
regulator"
(139 letters)
Database: 95pdb09Oct16x
66,450 sequences; 15,983,541 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
1d06A [d.110.3] NITROGEN FIXATION REGULATORY PROTEIN FIXL 57 4e-11
1s66U [d.110.3] HYPOTHETICAL PROTEIN YDDU 52 1e-09
1s66L [d.110.3] HYPOTHETICAL PROTEIN YDDU 52 1e-09
1vb6A [x.x.x] HEME PAS SENSOR PROTEIN 51 2e-09
1v9zA [d.110.3] HEME PAS SENSOR PROTEIN 51 2e-09
1vb6B [x.x.x] HEME PAS SENSOR PROTEIN 42 1e-06
2cmnA [x.x.x] SENSOR PROTEIN FIXL 39 7e-06
1y28A [d.110.3] SENSOR PROTEIN FIXL 38 2e-05
1v9yA [d.110.3] HEME PAS SENSOR PROTEIN 38 2e-05
1xj4B [x.x.x] SENSOR PROTEIN FIXL 38 2e-05
2vv6A [x.x.x] SENSOR PROTEIN FIXL 38 2e-05
1drmA [d.110.3] SENSOR PROTEIN FIXL 38 2e-05
1xj6A [x.x.x] SENSOR PROTEIN FIXL 37 3e-05
1xj4A [x.x.x] SENSOR PROTEIN FIXL 37 3e-05
1xj3A [d.110.3 (1dp6A)] SENSOR PROTEIN FIXL 37 3e-05
2vv6C [x.x.x] SENSOR PROTEIN FIXL 37 3e-05
1lt0A [d.110.3] SENSOR PROTEIN FIXL 37 3e-05
1lsvA [d.110.3] SENSOR PROTEIN FIXL 37 3e-05
1dp8A [d.110.3] FIXL PROTEIN 37 3e-05
>1d06A [d.110.3] NITROGEN FIXATION REGULATORY PROTEIN FIXL
Length = 130
Score = 56.6 bits (135), Expect = 4e-11
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 11 ILEQLADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAA 70
IL+ + DA + + TDG I +N AA FGY +E +GQ+L +++PE + H Q
Sbjct: 21 ILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRY 80
Query: 71 IDTGKTRLSGKPTLTKAIHKDG 92
+ TG+ R+ G + KDG
Sbjct: 81 MATGEKRIIGIDRVVSGQRKDG 102
>1s66U [d.110.3] HYPOTHETICAL PROTEIN YDDU
Length = 115
Score = 51.6 bits (122), Expect = 1e-09
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 12 LEQLADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAI 71
LEQ + + + + +N AA +L+GY +E +G ++D++IP L+ AH + +
Sbjct: 7 LEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNR 66
Query: 72 DTGKTRLSGKPTLTKAIHKDGRKLFVEMTFALISDANGNVIGSVAVARDVT 122
+ GK R+ G + KDG K++ + +S A G V +A+ RD +
Sbjct: 67 EGGKARVEGMSRELQLEKKDGSKIWTRFALSKVS-AEGKVY-YLALVRDAS 115
>1s66L [d.110.3] HYPOTHETICAL PROTEIN YDDU
Length = 119
Score = 51.6 bits (122), Expect = 1e-09
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Query: 12 LEQLADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAI 71
LEQ + + + + +N AA +L+GY +E +G ++D++IP L+ AH + +
Sbjct: 11 LEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNR 70
Query: 72 DTGKTRLSGKPTLTKAIHKDGRKLFVEMTFALISDANGNVIGSVAVARDVT 122
+ GK R+ G + KDG K++ + +S A G V +A+ RD +
Sbjct: 71 EGGKARVEGMSRELQLEKKDGSKIWTRFALSKVS-AEGKVY-YLALVRDAS 119
>1vb6A [x.x.x] HEME PAS SENSOR PROTEIN
Length = 114
Score = 51.2 bits (121), Expect = 2e-09
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 12 LEQLADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAI 71
LEQ + + + + +N AA +L+GY +E +G ++D++IP L+ AH + +
Sbjct: 7 LEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNR 66
Query: 72 DTGKTRLSGKPTLTKAIHKDGRKLFVEMTFALISDANGNVIGSVAVARD 120
+ GK R+ G + KDG K++ + +S A G V +A+ RD
Sbjct: 67 EGGKARVEGMSRELQLEKKDGSKIWTRFALSKVS-AEGKVY-YLALVRD 113
>1v9zA [d.110.3] HEME PAS SENSOR PROTEIN
Length = 113
Score = 51.2 bits (121), Expect = 2e-09
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 12 LEQLADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAI 71
LEQ + + + + +N AA +L+GY +E +G ++D++IP L+ AH + +
Sbjct: 7 LEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNR 66
Query: 72 DTGKTRLSGKPTLTKAIHKDGRKLFVEMTFALISDANGNVIGSVAVARD 120
+ GK R+ G + KDG K++ + +S A G V +A+ RD
Sbjct: 67 EGGKARVEGMSRELQLEKKDGSKIWTRFALSKVS-AEGKVY-YLALVRD 113
>1vb6B [x.x.x] HEME PAS SENSOR PROTEIN
Length = 110
Score = 42.0 bits (97), Expect = 1e-06
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 12 LEQLADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAI 71
LEQ + + + + +N AA +L+GY +E +G ++D++IP L+ AH + +
Sbjct: 7 LEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNR 66
Query: 72 DTGKTRLSGKPTLTKAIHKDGRKLFVEMTFALISDANGNVIGSVAVARD 120
+ G+ +S + L K KDG K++ + +S A G V +A+ RD
Sbjct: 67 EGGE-GMSRELQLEK---KDGSKIWTRFALSKVS-AEGKVY-YLALVRD 109
>2cmnA [x.x.x] SENSOR PROTEIN FIXL
Length = 117
Score = 39.3 bits (90), Expect = 7e-06
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 17 DALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTGKT 76
DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H A T
Sbjct: 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISAYRTTSDP 60
Query: 77 RLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 61 HIIGIGRIVTGKRRDG 76
>1y28A [d.110.3] SENSOR PROTEIN FIXL
Length = 119
Score = 38.1 bits (87), Expect = 2e-05
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 15 LADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTG 74
+ DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 1 IPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTS 60
Query: 75 KTRLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 61 DPHIIGIGAIVTGKRRDG 78
>1v9yA [d.110.3] HEME PAS SENSOR PROTEIN
Length = 103
Score = 38.1 bits (87), Expect = 2e-05
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 12 LEQLADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAH 63
LEQ + + + + +N AA +L+GY +E +G ++D++IP L+ AH
Sbjct: 7 LEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAH 58
>1xj4B [x.x.x] SENSOR PROTEIN FIXL
Length = 107
Score = 37.7 bits (86), Expect = 2e-05
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 15 LADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTG 74
+ DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 2 IPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTS 61
Query: 75 KTRLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 62 DPHIIGIGRIVTGKRRDG 79
>2vv6A [x.x.x] SENSOR PROTEIN FIXL
Length = 106
Score = 37.7 bits (86), Expect = 2e-05
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 15 LADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTG 74
+ DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 1 IPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTS 60
Query: 75 KTRLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 61 DPHIIGIGRIVTGKRRDG 78
>1drmA [d.110.3] SENSOR PROTEIN FIXL
Length = 119
Score = 37.7 bits (86), Expect = 2e-05
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 15 LADALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTG 74
+ DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 1 IPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTS 60
Query: 75 KTRLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 61 DPHIIGIGRIVTGKRRDG 78
>1xj6A [x.x.x] SENSOR PROTEIN FIXL
Length = 105
Score = 37.4 bits (85), Expect = 3e-05
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 17 DALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTGKT 76
DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 2 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDP 61
Query: 77 RLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 62 HIIGIGRIVTGKRRDG 77
>1xj4A [x.x.x] SENSOR PROTEIN FIXL
Length = 106
Score = 37.4 bits (85), Expect = 3e-05
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 17 DALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTGKT 76
DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDP 60
Query: 77 RLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 61 HIIGIGRIVTGKRRDG 76
>1xj3A [d.110.3 (1dp6A)] SENSOR PROTEIN FIXL
Length = 116
Score = 37.4 bits (85), Expect = 3e-05
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 17 DALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTGKT 76
DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDP 60
Query: 77 RLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 61 HIIGIGRIVTGKRRDG 76
>2vv6C [x.x.x] SENSOR PROTEIN FIXL
Length = 104
Score = 37.4 bits (85), Expect = 3e-05
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 17 DALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTGKT 76
DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDP 60
Query: 77 RLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 61 HIIGIGRIVTGKRRDG 76
>1lt0A [d.110.3] SENSOR PROTEIN FIXL
Length = 117
Score = 37.4 bits (85), Expect = 3e-05
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 17 DALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTGKT 76
DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 2 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDP 61
Query: 77 RLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 62 HIIGIGRIVTGKRRDG 77
>1lsvA [d.110.3] SENSOR PROTEIN FIXL
Length = 117
Score = 37.4 bits (85), Expect = 3e-05
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 17 DALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTGKT 76
DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDP 60
Query: 77 RLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 61 HIIGIGRIVTGKRRDG 76
>1dp8A [d.110.3] FIXL PROTEIN
Length = 118
Score = 37.4 bits (85), Expect = 3e-05
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 17 DALIFADTDGRITGWNHAAAELFGYGPDEALGQSLDLIIPERLQAAHWKGFQAAIDTGKT 76
DA+I D G I ++ AA LFG+ EA+GQ++++++PE ++ H T
Sbjct: 2 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDP 61
Query: 77 RLSGKPTLTKAIHKDG 92
+ G + +DG
Sbjct: 62 HIIGIGRIVTGKRRDG 77
Database: 95pdb09Oct16x
Posted date: Nov 2, 2009 3:15 PM
Number of letters in database: 15,983,541
Number of sequences in database: 66,450
Lambda K H
0.319 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 66450
Number of Hits to DB: 962,711,724
Number of extensions: 38428099
Number of successful extensions: 92207
Number of sequences better than 1.0e-03: 1871
Number of HSP's gapped: 90338
Number of HSP's successfully gapped: 2252
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)