RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= ABF07787.1 rmet0 ABF07787.1 GIB00349CH01 "transcriptional
regulator, TetR family"
         (236 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF00440 TetR_N "Bacterial regulatory proteins, tetR family"            37   2e-05

>PF00440 TetR_N "Bacterial regulatory proteins, tetR family"
          Length = 47

 Score = 37.4 bits (86), Expect = 2e-05
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 16 ILDVSLRLFNELGEPNVTTTTIAEAMEISPGNLYYHFRNKDDIINSI 62
          ILD +LRLF E G    +   IA A  +S G  Y HF +K+ ++ ++
Sbjct: 1  ILDAALRLFAERGYEATSVRDIAAAAGVSKGTFYRHFGSKEALLEAL 47


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.323    0.139    0.464 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 14,650,491
Number of extensions: 807835
Number of successful extensions: 105374
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 1976
Number of HSP's successfully gapped: 230
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)