RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= ABF07921.1 rmet0 ABF07921.1 GIB00349CH01 "short-chain
dehydrogenase/reductase SDR"
         (256 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF00106 adh_short "short chain dehydrogenase"                          40   4e-06

>PF00106 adh_short "short chain dehydrogenase"
          Length = 169

 Score = 40.1 bits (93), Expect = 4e-06
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 46  ELEAEATASGVRVAWHLQDLSQPGPSAGWLASVLDAVEEAPASITLILNAGVVEPIGPIT 105
           EL AE  A+G RV     D++     A   A V + VEE      L+ NAG+    GP+ 
Sbjct: 40  ELAAELEAAGGRVIAVQLDVTD---EASVEALVEEVVEEFGRLDILVNNAGIAGD-GPLE 95

Query: 106 QLHDSTLVPHLQTNLVTPMTMTGAFIEHTVRFDCPRKVLAISSGAARNPVPGWSAYCAGK 165
            L +         NL+ P  +T A +   +     R ++ ISS A     PG +AY A K
Sbjct: 96  DLTEEDFDRVFDVNLLGPFLLTQAALPLMLARGGGR-IVNISSVAGLLGSPGQAAYAASK 154

Query: 166 AGLDMFIRSVNTE 178
           A L+   RS+  E
Sbjct: 155 AALNGLTRSLAAE 167


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 13,535,139
Number of extensions: 741717
Number of successful extensions: 103796
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 1782
Number of HSP's successfully gapped: 272
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)