RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= ABF08549.1 rmet0 ABF08549.1 GIB00349CH01 "Transposase and
inactivated derivatives-like pro.."
         (341 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF03050 Transposase_25 "Transposase IS66 family "                      82   8e-19

>PF03050 Transposase_25 "Transposase IS66 family "
          Length = 160

 Score = 82.5 bits (203), Expect = 8e-19
 Identities = 45/95 (47%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 33  YSLSLRDLEEMMAERGLAVDHSMVHRWVIKLLPLFEKAFRRHKRSV--SKSWRMDETYLK 90
           Y LSLR  EE++AERG+ V HS + RWV K  PL E  +   +R +  S  W  DET +K
Sbjct: 47  YHLSLRRQEELLAERGIEVSHSTLARWVGKFAPLLEPLYDALRRELLSSDVWHADETPVK 106

Query: 91  VRGKWAYLYRAVDKAGNTIDFLLCARRDKVAARRY 125
           V GK  YL+ AVD  G  +DF L   RD  AA+R+
Sbjct: 107 VLGKKGYLWVAVDSTGPVVDFHLSPSRDGKAAKRF 141


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.325    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 18,936,676
Number of extensions: 1095775
Number of successful extensions: 144334
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 2433
Number of HSP's successfully gapped: 231
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)