RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= ABF08754.1 rmet0 ABF08754.1 GIB00349CH01 "TRAP-type
C4-dicarboxylate transport system, sma.."
         (183 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF04290 DctQ "Tripartite ATP-independent periplasmic transporter...    38   1e-05

>PF04290 DctQ "Tripartite ATP-independent periplasmic transporters,
           DctQ component"
          Length = 133

 Score = 38.0 bits (88), Expect = 1e-05
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 50  DDIVAWLCAASAFLILGQTFQHGGIVRVEMLLEAVGTKRRWLLEVISLTICLIFAGYAAW 109
           +++  +L A   FL      + GG VRV++L   +  + R LL+++ L +CL FAG  AW
Sbjct: 23  EELARYLFAWLVFLGAAYAVRTGGHVRVDLLYNRLPPRARRLLDLLGLLLCLAFAGLLAW 82

Query: 110 ALGSFAWQSWDIGDVSQGQIVIPLWI-----PQSFAVI 142
               F   +   G+ S   + IPLWI     P  FA++
Sbjct: 83  GGWDFVLAALRGGETSPA-LGIPLWIVYLALPVGFALL 119


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.313    0.128    0.373 

Gapped
Lambda     K      H
   0.267   0.0508    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 20,553,582
Number of extensions: 1153462
Number of successful extensions: 158384
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 3089
Number of HSP's successfully gapped: 215
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)