RPS-BLAST 2.2.16 [Mar-25-2007]

Database: 40scop73nmM 
           9549 sequences; 1,678,726 total letters

Searching..................................................done

Query= ABF09628.1 rmet0 ABF09628.1 GIB00349CH01 "dCTP deaminase"
         (188 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1xs1A [b.85.4.1] DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE                 192   2e-52
1oghA [b.85.4.1] BIFUNCTIONAL DEAMINASE/DIPHOSPHATASE                 160   2e-42
1vyqA1 [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLA...   114   8e-29
1ducA [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEODITOHYDROLASE     107   1e-26
2bsyA2 [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLA...   106   2e-26
1dudA [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE     105   4e-26
2bsyA1 [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLA...   100   2e-24
1mq7A [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE      80   3e-18

>1xs1A [b.85.4.1] DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE
          Length = 193

 Score =  192 bits (490), Expect = 2e-52
 Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 27/200 (13%)

Query: 3   IKSDKWIRR-MAEQHGMIEPFEPGQVRESDGRKIVSYGTSSYGYDIRCADEFKIFTNINS 61
              D+ I   + E    I P  P +       +I     +    D+R  ++F+ F    +
Sbjct: 2   RLCDRDIEAWLDEGRLSINPRPPVE-------RI-----NGATVDVRLGNKFRTFRGHTA 49

Query: 62  TIVD---PKNFDEKSFVDFK--------GDVCIIPPNSFALARTMEYFRIPRSVLTICLG 110
             +D   PK+    +             G+   + P   ALA T+E   +P  ++    G
Sbjct: 50  AFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDG 109

Query: 111 KSTYARCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEICET 168
           +S+ AR G++V+VT    +P W G + LEF N+  LP  +  G     + F         
Sbjct: 110 RSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEPLSGPAVR 169

Query: 169 SYADR-GGKYQGQQGVTLPK 187
            Y  R   KY+ QQG    +
Sbjct: 170 PYNRREDAKYRNQQGAVASR 189


>1oghA [b.85.4.1] BIFUNCTIONAL DEAMINASE/DIPHOSPHATASE
          Length = 175

 Score =  160 bits (405), Expect = 2e-42
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 10/174 (5%)

Query: 3   IKSDKWIRRMAEQH-GMIEPFEPGQVRESDGRK---IVSYGTSSYGYDIRCADEFKIFTN 58
           I SDK I         +I+PF    V                    YD+     +K    
Sbjct: 2   ILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKI 61

Query: 59  INSTIVDPKNFDEKS---FVDFKGDVCIIPPNSFALARTMEYFRIPRSVLTICLGKSTYA 115
            NS +V P N++          +            L  T EY  +P  +     G+S+  
Sbjct: 62  KNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLG 121

Query: 116 RCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEICE 167
           R  +  + T    +  ++G +TLE       P  +Y  +   Q++F +     +
Sbjct: 122 RVFLTSHQTAGWIDAGFKGKITLEIVAFDK-PVILYKNQRIGQLIFSKLLSPAD 174


>1vyqA1 [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
           A:1 -- 159
          Length = 139

 Score =  114 bits (287), Expect = 8e-29
 Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 4/132 (3%)

Query: 47  IRCADEFKIFTNINSTIVDPK--NFDEKSFVDFKGDVCIIPPNSFALARTMEYFRIPRSV 104
           +  +DE +     + T  D     F  K  V        +     A+A   +      + 
Sbjct: 6   VCLSDEVREMYKNHKTHHDSGLDLFIVKDEVLKPKSTTFVKLGIKAIALQYKSNYYIVNT 65

Query: 105 LTICLGKSTYARCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFES 162
             +   +S+ ++  + +  +    +  + G +     NT+     I   +   Q++ F  
Sbjct: 66  SFLLFPRSSISKTPLRLANSIGLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQLVSFTG 125

Query: 163 DEICETSYADRG 174
           + +      +  
Sbjct: 126 EPLSFELVEELD 137


>1ducA [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEODITOHYDROLASE
          Length = 118

 Score =  107 bits (269), Expect = 1e-26
 Identities = 19/113 (16%), Positives = 45/113 (39%)

Query: 60  NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTMEYFRIPRSVLTICLGKSTYARCGI 119
             T +  K  ++  F        +IP +   +  T    ++P +      GKS+ A+ G+
Sbjct: 5   QGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGL 64

Query: 120 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEICETSYAD 172
           ++N    +  + G + +  +N      K+  G+  AQ++  +        + +
Sbjct: 65  LINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDE 117


>2bsyA2 [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
           A:121 -- 256
          Length = 136

 Score =  106 bits (266), Expect = 2e-26
 Identities = 14/123 (11%), Positives = 30/123 (24%), Gaps = 3/123 (2%)

Query: 62  TIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTMEYFRIPRSVLTICLGKSTYARCGIIV 121
            I  P+   +            + P+                      G+S  A  GI+V
Sbjct: 2   PINHPQYPGDVGLDVSLPKDLALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAMQGILV 61

Query: 122 NVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEICETSYADRGGKYQGQQ 181
                     G V +  +N +     +       Q+++     +             G +
Sbjct: 62  KPC---RWRRGGVDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHLTSFYSPHSDAGVLGPR 118

Query: 182 GVT 184
            + 
Sbjct: 119 SLF 121


>1dudA [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
          Length = 136

 Score =  105 bits (264), Expect = 4e-26
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 12/133 (9%)

Query: 43  YGYDIRCADEFKIFTNINSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTMEYFRIPR 102
              D R   EF + T            D ++ ++   D   + P    L  T     I  
Sbjct: 8   KILDPRVGKEFPLPTYAT---SGSAGLDLRACLN---DAVELAPGDTTLVPTGLAIHIAD 61

Query: 103 S-VLTICLGKSTYA-RCGIIVNVTP--FEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVL 158
             +  + L +S    + GI++       + +++G + +   N       I  GE  AQ++
Sbjct: 62  PSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMI 121

Query: 159 FF--ESDEICETS 169
           F      E     
Sbjct: 122 FVPVVQAEFNLVE 134


>2bsyA1 [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
           A:4 -- 116
          Length = 113

 Score = 99.9 bits (249), Expect = 2e-24
 Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 3/108 (2%)

Query: 54  KIFTNINSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTMEYFRIPRSVLTICLGKST 113
            I     +  +  +               ++ P          Y R P     +  G + 
Sbjct: 3   HIRYAFQNDKLLLQQASVGRLTLVNKTTILLRPMKTTTVDLGLYARPPEGHGLMLWGST- 61

Query: 114 YARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFE 161
                +  +V   +P + G + L   N     + +   E    +  F 
Sbjct: 62  --SRPVTSHVGIIDPGYTGELRLILQNQRRYNSTLRPSELKIHLAAFR 107


>1mq7A [b.85.4.1] DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
          Length = 134

 Score = 79.5 bits (196), Expect = 3e-18
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 56  FTNINSTIVDPKNFDEKS-FVDFK-GDVCIIPPNSFALARTMEYFRIPRSVLTICLGKST 113
              ++  +  P    +    VD    +   + P   AL RT     +P  ++ +   +S 
Sbjct: 6   IVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSG 65

Query: 114 YA-RCGIIVNVTP--FEPEWEGYVTLEFSNTTP-LPAKIYAGEGCAQVL 158
            A R G+ +  +P   +  + G + +   N  P  P  ++ G+  AQ+L
Sbjct: 66  LATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLL 114


  Database: 40scop73nmM
    Posted date:  Nov 2, 2009 11:39 AM
  Number of letters in database: 1,678,726
  Number of sequences in database:  9549
  
Lambda     K      H
   0.320    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9549
Number of Hits to DB: 19,226,754
Number of extensions: 1385614
Number of successful extensions: 5628
Number of sequences better than 1.0e-03: 8
Number of HSP's gapped: 5508
Number of HSP's successfully gapped: 105
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)