RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= ABE38586.1 rpal2 ABE38586.1 GIB00345CH01
"Poly-beta-hydroxybutyrate polymerase-like"
         (586 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF07167 PhaC_N "Poly-beta-hydroxybutyrate polymerase (PhaC) N-te...   178   7e-48
PF12551 PHBC_N "Poly-beta-hydroxybutyrate polymerase N terminal"       46   4e-08
PF01738 DLH "Dienelactone hydrolase family"                            35   8e-05

>PF07167 PhaC_N "Poly-beta-hydroxybutyrate polymerase (PhaC)
           N-terminus"
          Length = 169

 Score =  178 bits (451), Expect = 7e-48
 Identities = 88/170 (51%), Positives = 111/170 (65%), Gaps = 1/170 (0%)

Query: 95  PQDRRFAGPEWRQPPFNLMAQSFLLAEEWWRDATTGIRGVSQQNAKIVEFAMRQMLDVFA 154
           P+DRRFA P W+Q PF  + QS+LL  +W  DA   +  +   + + V FA RQ+LD  +
Sbjct: 1   PKDRRFADPAWQQNPFRFLKQSYLLNAKWLHDAVDDVE-LDPHDRERVRFAARQLLDALS 59

Query: 155 PSNFALTNPEVIRRTLTSEGGNVTAGLRNWWEDLLQTMSHDTDLKHDFEVGRDVAVTPGK 214
           PSNF  TNPE ++ TL + G ++  GL N  EDL +        +  FEVGR+VA TPGK
Sbjct: 60  PSNFLATNPEALKETLETGGESLVRGLENLLEDLERGGKISQTDESAFEVGRNVATTPGK 119

Query: 215 VVYSNDLIELIQYAPATGEVRPEPILIVPAWIMKYYILDLSPHNSLVKYL 264
           VV+ NDLIELIQY P T +V   P+LIVP WI KYYILDL P NSLV+YL
Sbjct: 120 VVFRNDLIELIQYKPTTEKVHARPLLIVPPWINKYYILDLQPENSLVRYL 169


>PF12551 PHBC_N "Poly-beta-hydroxybutyrate polymerase N terminal"
          Length = 46

 Score = 45.9 bits (108), Expect = 4e-08
 Identities = 22/31 (70%), Positives = 25/31 (80%)

Query: 26 DRSLHAALAPLTGGLSPTALSLAYADWLSHL 56
          DR+ HAALA LTGGLSP +L+LAY DW  HL
Sbjct: 10 DRAAHAALARLTGGLSPASLALAYLDWALHL 40


>PF01738 DLH "Dienelactone hydrolase family"
          Length = 213

 Score = 35.0 bits (80), Expect = 8e-05
 Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 25/122 (20%)

Query: 232 GEVRPEPILIVPAWIMKYYILDLSPH-NSLVKYLTEQGFTVFMVSW-------------- 276
           G +RP      PA ++ + I  L+PH   +   L E G+ V                   
Sbjct: 2   GALRPAGGGPGPAVVVIHEIFGLNPHIRDVADRLAEAGYVVLAPDLFGGGGDPGDPEEAA 61

Query: 277 ---RNPTAKHRDLTLEDYRRLGVMAAIETIRAIVPHQP--IHAVGYCLGGTLLSIAAAAM 331
              R   AK  +  LED R     AA++ +RA+    P  I  VG+C GG L  + AA  
Sbjct: 62  ALLRELVAKRPEAVLEDLR-----AALDYLRALPEVDPGRIGVVGFCFGGRLALLLAARD 116

Query: 332 SR 333
            R
Sbjct: 117 PR 118


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.320    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 18,322,588
Number of extensions: 1014727
Number of successful extensions: 140476
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 2363
Number of HSP's successfully gapped: 206
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)