RPS-BLAST 2.2.16 [Mar-25-2007]
Database: 40scop73nmM
9549 sequences; 1,678,726 total letters
Searching..................................................done
Query= ACF67239.1 sent8 ACF67239.1 GIB00763CH01 "transcriptional
regulator HilD"
(309 letters)
Score E
Sequences producing significant alignments: (bits) Value
1v4aA1 [a.24.16.4] GLUTAMATE-AMMONIA-LIGASE ADENYLYLTRANSFERASE ... 74 2e-16
1d5yA2 [a.4.1.8] ROB TRANSCRIPTION FACTOR A:57 -- 121 62 1e-12
1bl0A2 [a.4.1.8] PROTEIN (MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN... 62 1e-12
1xcbA1 [a.4.5.38] REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX A:... 37 3e-05
1bl0A1 [a.4.1.8] PROTEIN (MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN... 36 7e-05
>1v4aA1 [a.24.16.4] GLUTAMATE-AMMONIA-LIGASE ADENYLYLTRANSFERASE
A:287 -- 437
Length = 151
Score = 74.0 bits (181), Expect = 2e-16
Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 1/108 (0%)
Query: 197 EIILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEE-GTSFSDIYL 255
EI L S S L+ +A+ +S + ++ + L
Sbjct: 39 EIEFIVQVFQLIRGGREPSLQSRSLLPTLSAIAELHLLSENDAEQLRVAYLFLRRLENLL 98
Query: 256 SARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTF 303
+ ++ + L N +A + + F
Sbjct: 99 QSINDEQTQTLPSDELNRARLAWAXDFADWPQLTGALTAHXTNVRRVF 146
>1d5yA2 [a.4.1.8] ROB TRANSCRIPTION FACTOR A:57 -- 121
Length = 65
Score = 61.7 bits (150), Expect = 1e-12
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 258 RMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFIK 305
R++++A LR+ + +AL+ +DS F + FKK F TP+ + +
Sbjct: 2 RLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 49
>1bl0A2 [a.4.1.8] PROTEIN (MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN)
A:63 -- 124
Length = 62
Score = 61.7 bits (150), Expect = 1e-12
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 258 RMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFIK 305
+M + A+ L+ N + +A + G++S + FK YF P +
Sbjct: 2 KMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRM 49
>1xcbA1 [a.4.5.38] REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX A:4
-- 77
Length = 74
Score = 37.2 bits (86), Expect = 3e-05
Identities = 4/63 (6%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 207 LKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKR---KLAEEGTSFSDIYLSARMNQAA 263
R+ + + + + + ++ +++ GT + +
Sbjct: 10 TYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGSYGTRGVGYTVPVLKRELR 69
Query: 264 KLL 266
+L
Sbjct: 70 HIL 72
>1bl0A1 [a.4.1.8] PROTEIN (MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN)
A:9 -- 62
Length = 54
Score = 35.9 bits (83), Expect = 7e-05
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 256 SARMNQAAKLLRIG---NHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFIK 305
+ ++ + ++ V+ + GY S + + FKK + +I+
Sbjct: 2 AITIHSILDWIEDNLESPLSLEKVSERSGY-SKWHLQRMFKKETGHSLGQYIR 53
Score = 32.4 bits (74), Expect = 7e-04
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 209 ERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEE-GTSFSDIYLSA 257
+ + I + L V++ S L+R +E G S Y+ +
Sbjct: 6 HSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQ-YIRS 54
Database: 40scop73nmM
Posted date: Nov 2, 2009 11:39 AM
Number of letters in database: 1,678,726
Number of sequences in database: 9549
Lambda K H
0.323 0.137 0.398
Gapped
Lambda K H
0.267 0.0406 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9549
Number of Hits to DB: 11,580,614
Number of extensions: 805287
Number of successful extensions: 3085
Number of sequences better than 1.0e-03: 7
Number of HSP's gapped: 3021
Number of HSP's successfully gapped: 114
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)