# hmmscan :: search sequence(s) against a profile HMM database
# HMMER 3.0b2 (June 2009); http://hmmer.org/
# Copyright (C) 2009 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /home/niguts/usr08/shisakam/FASTA/gib_28344.fasta
# target HMM database: /home/niguts/usr08/shisakam/PFAM/ver24.0/Pfam-A.hmm
# sequence search space set to: 100000
# set reporting thresholds to: GA cutoffs
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: ACF56707.1 [L=289]
Description: spne4 ACF56707.1 GIB00761CH01 "conserved hypothetical protein"
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-17 66.6 0.0 1.6e-17 66.0 0.0 1.3 1 PF02896 PEP-utilising enzyme, TIM barrel domain
------ inclusion threshold ------
2.6 9.6 0.0 12 7.5 0.0 1.9 2 PF02016 LD-carboxypeptidase
4.7 8.8 0.0 9.3 7.8 0.0 1.4 1 PF06044 Dam-replacing family
6.1 7.7 0.0 16 6.3 0.0 1.6 1 PF00311 Phosphoenolpyruvate carboxylase
9.7 8.8 0.2 64 6.1 0.0 2.2 1 PF08360 QacR-like protein, C-terminal region
16 7.0 0.0 70 4.9 0.0 1.8 1 PF07555 beta-N-acetylglucosaminidase
17 8.0 0.0 36 6.9 0.0 1.5 1 PF10893 Protein of unknown function (DUF2724)
20 8.1 0.5 65 6.5 0.3 1.9 1 PF11969 Scavenger mRNA decapping enzyme C-term binding
21 7.3 0.0 65 5.7 0.0 1.8 1 PF01842 ACT domain
27 7.2 0.2 2.1e+02 4.3 0.1 2.2 1 PF05233 PHB accumulation regulatory domain
28 6.1 0.1 56 5.1 0.0 1.6 1 PF01120 Alpha-L-fucosidase
30 7.3 0.0 53 6.5 0.0 1.4 1 PF07550 Protein of unknown function (DUF1533)
37 6.3 0.0 69 5.4 0.0 1.4 1 PF01756 Acyl-CoA oxidase
45 6.4 0.0 1.3e+02 4.9 0.0 1.8 1 PF02671 Paired amphipathic helix repeat
61 5.8 0.0 1.1e+02 5.0 0.0 1.3 1 PF03597 Cytochrome oxidase maturation protein cbb3-type
78 5.7 0.1 2e+02 4.4 0.0 1.7 1 PF11426 Tn7 transposition regulator TnsC
98 5.2 0.0 2e+02 4.2 0.0 1.5 1 PF07582 AP endonuclease family 2 C terminus
1e+02 5.2 0.1 2.5e+02 4.0 0.1 1.6 1 PF12153 LPS binding domain of CAP18 (C terminal)
1.2e+02 4.9 0.1 2.6e+02 3.8 0.1 1.5 1 PF03522 K-Cl Co-transporter type 1 (KCC1)
1.3e+02 4.8 0.0 2.7e+02 3.8 0.0 1.5 1 PF00535 Glycosyl transferase family 2
1.3e+02 3.5 0.0 2.2e+02 2.8 0.0 1.2 1 PF10011 Predicted membrane protein (DUF2254)
1.5e+02 4.3 0.1 2.3e+02 3.6 0.0 1.2 1 PF05308 Protein of unknown function (DUF729)
1.5e+02 4.9 0.1 3.1e+02 3.9 0.1 1.4 1 PF11408 Sgs1 RecQ helicase
2.4e+02 3.5 0.3 4.1e+02 2.7 0.2 1.3 1 PF05678 VQ motif
2.6e+02 3.8 0.0 5e+02 2.9 0.0 1.4 1 PF11295 Protein of unknown function (DUF3096)
3.4e+02 3.8 0.2 9.1e+02 2.5 0.1 1.7 1 PF05184 Saposin-like type B, region 1
3.5e+02 3.9 1.3 1.2e+03 2.3 0.1 2.2 1 PF03489 Saposin-like type B, region 2
3.7e+02 3.9 0.0 9e+02 2.7 0.0 1.6 1 PF12390 Selenocysteine synthase N terminal
4e+02 1.9 0.1 5.9e+02 1.3 0.0 1.1 1 PF05786 Barren protein
4.6e+02 2.8 0.0 1.1e+03 1.6 0.0 1.5 1 PF12224 Putative amidoligase enzyme
4.7e+02 3.3 0.0 9.3e+02 2.3 0.0 1.4 1 PF02216 B domain
4.9e+02 3.0 0.9 9.9e+02 2.0 0.6 1.5 1 PF12436 Ubiquitin-specific protease 7
7.1e+02 3.0 1.4 1.6e+03 1.8 0.2 2.1 1 PF07708 Tash protein PEST motif
Domain and alignment annotation for each model:
>> PF02896 PEP-utilising enzyme, TIM barrel domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 66.0 0.0 5.4e-21 1.6e-17 40 258 .. 21 232 .. 9 256 .. 0.84
Alignments for each domain:
== domain 1 score: 66.0 bits; conditional E-value: 5.4e-21
-----EEECHHHHCCCCS..HHHHHH.HHHHH.HHHHHHT---EEEEE---S-GG..GGSCSSHHHH--SSTT----THHHHHHSHHHHHHHHHHHHHH CS
PF02896 40 aeGiGLlRtEflfmdrde..lpteee.qaeay.kavlealngrpvvvRtlDiggd..kelpelveepeevNPmlGfRgirlalsepelfetqlrAilra 132
+ +G++R E+l + ++ + + + +++y +++ + + v++R+ + l ++e+ e P+ G+Rg r+ l + f+++ + ++
ACF56707.1 21 FHHVGMIRGEYLLRELNQniILASCQqFVKDYlETICSLYSDEEVWYRFTELTNTeaNCLVGTKEFFDEGHPLFGYRGTRRLLACLDEFQAEAHVVTEV 119
5679*********999764433333324567735677778899******999877446788889*********************************** PP
CCHH.EEEEE-SS--SHHHHHHHHHHHHHHHHHHHHH.S---TT-B---B--SHHHHHTHHHHTTT.SSB-B---HHHHHHHCT--TTTCCHHHHS-TT CS
PF02896 133 saeg.kleimlPlvatveelreakkvieevkeevekeglkvdkeikvGiMiEipsaalladklake.vdFfSiGtNDLtQytlavdRddeevaklydpl 229
+++ +l++++P+v+ +++l++a + ++++ kvG+MiE psa + + ++ + ++ + +G NDLt +++a+ R++ + +d
ACF56707.1 120 YQTNpNLSVIFPFVNDADQLKQAITALRQY-----------GFTGKVGTMIELPSAYFDLSSILETgISKIVVGMNDLTSFVFATMRNS----QWHDLE 203
99666*******************999998...........34568*****************9988******************9986....568889 PP
TCHHHHHHHHHHHHHHH---B-------- CS
PF02896 230 epavlrlvkevikaaekkglkvgiCGela 258
+p++l +++ + ++a+k+ ++ ++ G l
ACF56707.1 204 SPIMLDMLRDMQDKARKNKINFAVAGYLN 232
99999999999999999999999888764 PP
>> PF02016 LD-carboxypeptidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.6 0.0 0.49 1.5e+03 12 39 .. 135 162 .. 126 169 .. 0.79
2 ? 7.5 0.0 0.0038 12 82 138 .. 166 225 .. 152 285 .. 0.77
Alignments for each domain:
== domain 1 score: 0.6 bits; conditional E-value: 0.49
HH.HHHHHHHHHH-TTEEEEE-GGGG-- CS
PF02016 12 deerleraikrleslglevvvgenalar 39
d+++l++ai++l++ g++ +vg +
ACF56707.1 135 DADQLKQAITALRQYGFTGKVGTMIELP 162
34799************99999877655 PP
== domain 2 score: 7.5 bits; conditional E-value: 0.0038
HH.........G-EEE--TT---HHHHHHHTT--B.EE---GGGGG....S----HHHHH CS
PF02016 82 ldyeaikkn..pkifvGySDiTaLllallaktglvtfhGpmlaslfgee.deytlesfkk 138
d ++i + ki+vG D T++ +a ++ ++ + +p +++ + + d+ ++++
ACF56707.1 166 FDLSSILETgiSKIVVGMNDLTSFVFATMRNSQWHDLESPIMLDMLRDMqDKARKNKINF 225
455566555679****************************99999887645555555444 PP
>> PF06044 Dam-replacing family
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 7.8 0.0 0.0031 9.3 192 242 .. 102 151 .. 97 157 .. 0.89
Alignments for each domain:
== domain 1 score: 7.8 bits; conditional E-value: 0.0031
PF06044 192 ilkcidklekeefsledvyefenelklkypknnhikdkirqqlqilrdkgl 242
+l+c+d++++e + +vy+ + +l++ +p n d+++q + lr g+
ACF56707.1 102 LLACLDEFQAEAHVVTEVYQTNPNLSVIFPFVND-ADQLKQAITALRQYGF 151
799***************************8886.5889999999998776 PP
>> PF00311 Phosphoenolpyruvate carboxylase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.3 0.0 0.0053 16 87 138 .. 99 148 .. 82 159 .. 0.86
Alignments for each domain:
== domain 1 score: 6.3 bits; conditional E-value: 0.0053
PF00311 87 rerklLaetlesipeeadfakelkgkrpifevilPmteevkevievarvlae 138
+ r+lL l ++ ea + e+ +++p + vi P++++++++ +++ l++
ACF56707.1 99 T-RRLL-ACLDEFQAEAHVVTEVYQTNPNLSVIFPFVNDADQLKQAITALRQ 148
4.4466.89999999999999999999*****************99888765 PP
>> PF08360 QacR-like protein, C-terminal region
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.1 0.0 0.021 64 32 73 .. 212 253 .. 208 261 .. 0.85
Alignments for each domain:
== domain 1 score: 6.1 bits; conditional E-value: 0.021
HSSSGGGHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHH CS
PF08360 32 eeyktPlsnaieelaseqvksksilekllkLerkslkayeki 73
+++ + +++a + + s ++k+++L k + y i
ACF56707.1 212 RDMQDKARKNKINFAVAGYLNTSFIQKMNQLGIKCIIHYSSI 253
56666667778899*********************9999877 PP
>> PF07555 beta-N-acetylglucosaminidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.9 0.0 0.023 70 41 75 .. 194 228 .. 178 243 .. 0.85
Alignments for each domain:
== domain 1 score: 4.9 bits; conditional E-value: 0.023
GGTTTTTS---HHHHHHHHHHHHHHHHTT-EEEE- CS
PF07555 41 yhrekWrelYpeeeleklkeLvkaakenkvdFvya 75
+++W++l l+ l+++ ++a++nk++F a
ACF56707.1 194 MRNSQWHDLESPIMLDMLRDMQDKARKNKINFAVA 228
5678****************************865 PP
>> PF10893 Protein of unknown function (DUF2724)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.9 0.0 0.012 36 33 64 .. 198 231 .. 191 234 .. 0.81
Alignments for each domain:
== domain 1 score: 6.9 bits; conditional E-value: 0.012
PF10893 33 rWhPCrs..qsellkglstkkrkeklsfllkgvk 64
+Wh +s ++l++++ k rk+k++f ++g +
ACF56707.1 198 QWHDLESpiMLDMLRDMQDKARKNKINFAVAGYL 231
7888866224589*****************9976 PP
>> PF11969 Scavenger mRNA decapping enzyme C-term binding
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.5 0.3 0.022 65 38 71 .. 246 279 .. 210 288 .. 0.85
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.022
EEEESS--SSGGG--TTCCCHHHHHHHHHHHHHH CS
PF11969 38 lvipkrdikslrdltkehlplLkemrekakkvie 71
++i +++i+++ dl+ +h + Lk+++e++kk+ +
ACF56707.1 246 CIIHYSSIPEIFDLEIDHPDHLKHIKEESKKLQR 279
456677***********************99865 PP
>> PF01842 ACT domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.7 0.0 0.021 65 42 64 .. 127 149 .. 115 151 .. 0.82
Alignments for each domain:
== domain 1 score: 5.7 bits; conditional E-value: 0.021
EEEEEEEECCCGHHHHHHHHHHH CS
PF01842 42 ivfvtvvvdeedleaaleaLkkl 64
v++ +v d+++l++a+ aL+++
ACF56707.1 127 SVIFPFVNDADQLKQAITALRQY 149
688999***************97 PP
>> PF05233 PHB accumulation regulatory domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.3 0.1 0.069 2.1e+02 30 41 .] 209 220 .. 208 220 .. 0.88
Alignments for each domain:
== domain 1 score: 4.3 bits; conditional E-value: 0.069
PF05233 30 qmFldmQeqmqe 41
+m++dmQ++ ++
ACF56707.1 209 DMLRDMQDKARK 220
7********886 PP
>> PF01120 Alpha-L-fucosidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.1 0.0 0.019 56 125 159 .. 195 231 .. 189 284 .. 0.87
Alignments for each domain:
== domain 1 score: 5.1 bits; conditional E-value: 0.019
PF01120 125 kysdynivdtgpkrDivkelakavrkeglklgl..yy 159
+ s++ ++ ++ D+++ +++ +rk+++++ + y
ACF56707.1 195 RNSQWHDLESPIMLDMLRDMQDKARKNKINFAVagYL 231
4567999************************996554 PP
>> PF07550 Protein of unknown function (DUF1533)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.5 0.0 0.018 53 24 65 .] 195 237 .. 174 237 .. 0.71
Alignments for each domain:
== domain 1 score: 6.5 bits; conditional E-value: 0.018
PF07550 24 enskyeiseagk.lkikagvfnkdGentIkIkakGYkdatitq 65
+ns++ e+ l+ + +k+++n+I++ GY +++++q
ACF56707.1 195 RNSQWHDLESPImLDMLRDMQDKARKNKINFAVAGYLNTSFIQ 237
55666555666667777777899**************999987 PP
>> PF01756 Acyl-CoA oxidase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.4 0.0 0.023 69 59 90 .. 31 63 .. 7 77 .. 0.84
Alignments for each domain:
== domain 1 score: 5.4 bits; conditional E-value: 0.023
PF01756 59 yllkaflekve.eiadeelkevLeklakLYalw 90
yll++ +++ ++ ++ +k++Le++++LY+
ACF56707.1 31 YLLRELNQNIIlASCQQFVKDYLETICSLYSDE 63
788888888888889999************865 PP
>> PF02671 Paired amphipathic helix repeat
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.9 0.0 0.043 1.3e+02 7 26 .. 102 121 .. 100 148 .. 0.88
Alignments for each domain:
== domain 1 score: 4.9 bits; conditional E-value: 0.043
PF02671 7 FLeiLhdyskeiisrtelyq 26
L +L +++e +te+yq
ACF56707.1 102 LLACLDEFQAEAHVVTEVYQ 121
699****************9 PP
>> PF03597 Cytochrome oxidase maturation protein cbb3-type
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 5.0 0.0 0.036 1.1e+02 21 37 .. 190 206 .. 184 213 .. 0.86
Alignments for each domain:
== domain 1 score: 5.0 bits; conditional E-value: 0.036
PF03597 21 FlWavksgQfDDlegpa 37
+ ++++ Q +Dle+p
ACF56707.1 190 VFATMRNSQWHDLESPI 206
5789**********994 PP
>> PF11426 Tn7 transposition regulator TnsC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.4 0.0 0.065 2e+02 1 11 [. 194 204 .. 194 205 .. 0.88
Alignments for each domain:
== domain 1 score: 4.4 bits; conditional E-value: 0.065
PF11426 1 iKqkdWhtLds 11
++ ++Wh+L+s
ACF56707.1 194 MRNSQWHDLES 204
6889*****97 PP
>> PF07582 AP endonuclease family 2 C terminus
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.2 0.0 0.067 2e+02 3 17 .. 140 154 .. 138 156 .. 0.86
Alignments for each domain:
== domain 1 score: 4.2 bits; conditional E-value: 0.067
PF07582 3 eeifsaLnqigYdgp 17
++ + aL+q+g++g
ACF56707.1 140 KQAITALRQYGFTGK 154
67899********95 PP
>> PF12153 LPS binding domain of CAP18 (C terminal)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 4.0 0.1 0.081 2.5e+02 8 15 .. 9 16 .. 2 16 .. 0.87
Alignments for each domain:
== domain 1 score: 4.0 bits; conditional E-value: 0.081
HHHHHHHH CS
PF12153 8 geKIgEkl 15
geKI Ek+
ACF56707.1 9 GEKILEKI 16
9******8 PP
>> PF03522 K-Cl Co-transporter type 1 (KCC1)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.8 0.1 0.085 2.6e+02 12 18 .. 58 64 .. 56 65 .. 0.91
Alignments for each domain:
== domain 1 score: 3.8 bits; conditional E-value: 0.085
PF03522 12 SvgSDed 18
S++SDe+
ACF56707.1 58 SLYSDEE 64
9*****8 PP
>> PF00535 Glycosyl transferase family 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.8 0.0 0.089 2.7e+02 1 22 [. 127 148 .. 127 159 .. 0.88
Alignments for each domain:
== domain 1 score: 3.8 bits; conditional E-value: 0.089
EEEEEESS-CCCHHHHHHHHHC CS
PF00535 1 sviiptyNeekylletleslla 22
svi p+ N ++ l++++++l++
ACF56707.1 127 SVIFPFVNDADQLKQAITALRQ 148
8*****************8876 PP
>> PF10011 Predicted membrane protein (DUF2254)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.8 0.0 0.073 2.2e+02 305 354 .. 101 150 .. 97 158 .. 0.83
Alignments for each domain:
== domain 1 score: 2.8 bits; conditional E-value: 0.073
PF10011 305 rltrllselaerklpsdaredeeekprvvvpelsfedllddafaqirryg 354
rl ++l e++ + +++++ + ++ v++p ++ +d l++a++++r+yg
ACF56707.1 101 RLLACLDEFQAEAHVVTEVYQTNPNLSVIFPFVNDADQLKQAITALRQYG 150
6667777777777777777777777************************9 PP
>> PF05308 Protein of unknown function (DUF729)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.6 0.0 0.075 2.3e+02 230 248 .. 197 215 .. 187 219 .. 0.78
Alignments for each domain:
== domain 1 score: 3.6 bits; conditional E-value: 0.075
PF05308 230 skskskelpnmldvLkdmn 248
s+ + e p mld+L+dm+
ACF56707.1 197 SQWHDLESPIMLDMLRDMQ 215
4445567899********6 PP
>> PF11408 Sgs1 RecQ helicase
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.9 0.1 0.1 3.1e+02 21 40 .. 221 240 .. 208 242 .. 0.88
Alignments for each domain:
== domain 1 score: 3.9 bits; conditional E-value: 0.1
--SSS-----S-HHHHHHHH CS
PF11408 21 nrmnlpvdtylpdnilkkiA 40
n++n++v yl+ + ++k+
ACF56707.1 221 NKINFAVAGYLNTSFIQKMN 240
9*****************95 PP
>> PF05678 VQ motif
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.7 0.2 0.14 4.1e+02 5 13 .. 117 125 .. 114 125 .. 0.88
Alignments for each domain:
== domain 1 score: 2.7 bits; conditional E-value: 0.14
PF05678 5 ptvihtdpa 13
++v++t+p+
ACF56707.1 117 TEVYQTNPN 125
9*******7 PP
>> PF11295 Protein of unknown function (DUF3096)
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.9 0.0 0.17 5e+02 18 26 .. 223 231 .. 222 233 .. 0.94
Alignments for each domain:
== domain 1 score: 2.9 bits; conditional E-value: 0.17
PF11295 18 LnyiVAiYL 26
+n++VA YL
ACF56707.1 223 INFAVAGYL 231
7*******9 PP
>> PF05184 Saposin-like type B, region 1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.5 0.1 0.3 9.1e+02 24 37 .. 46 59 .. 45 59 .. 0.88
Alignments for each domain:
== domain 1 score: 2.5 bits; conditional E-value: 0.3
PF05184 24 eeeIikaldkvCel 37
++ ++++l+ +C+l
ACF56707.1 46 QQFVKDYLETICSL 59
67899*******85 PP
>> PF03489 Saposin-like type B, region 2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.3 0.1 0.38 1.2e+03 4 15 .. 45 56 .. 43 59 .. 0.89
Alignments for each domain:
== domain 1 score: 2.3 bits; conditional E-value: 0.38
HHHHHHHHHHHH CS
PF03489 4 CkefVdqYgpli 15
C++fV Y+++i
ACF56707.1 45 CQQFVKDYLETI 56
********9987 PP
>> PF12390 Selenocysteine synthase N terminal
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.7 0.0 0.3 9e+02 26 40 .] 205 219 .. 200 219 .. 0.88
Alignments for each domain:
== domain 1 score: 2.7 bits; conditional E-value: 0.3
PF12390 26 alvrdavrafLdrcR 40
+ +d +r+++d++R
ACF56707.1 205 PIMLDMLRDMQDKAR 219
567899********9 PP
>> PF05786 Barren protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.3 0.0 0.2 5.9e+02 100 121 .. 208 229 .. 206 231 .. 0.92
Alignments for each domain:
== domain 1 score: 1.3 bits; conditional E-value: 0.2
PF05786 100 IDylsdllklkegeetNFqkAs 121
D l d+ ++ ++++NF +A+
ACF56707.1 208 LDMLRDMQDKARKNKINFAVAG 229
79*****************997 PP
>> PF12224 Putative amidoligase enzyme
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.6 0.0 0.36 1.1e+03 157 224 .. 23 90 .. 10 100 .. 0.80
Alignments for each domain:
== domain 1 score: 1.6 bits; conditional E-value: 0.36
PF12224 157 ycrpfreeyvervrleaersatldeleddyltrnptrnraldllplfaqldedsrynalnleskvkar 224
++ +r ey+ r++ ++ a+ +++ +dyl++ ++ +++ ++ + f++l++ + + +++ + ++
ACF56707.1 23 HVGMIRGEYLLRELNQNIILASCQQFVKDYLETICSLYSDEEVWYRFTELTNTEANCLVGTKEFFDEG 90
6667777888885555556688999************************9999888888888777665 PP
>> PF02216 B domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.3 0.0 0.31 9.3e+02 36 53 .. 262 279 .. 260 280 .. 0.91
Alignments for each domain:
== domain 1 score: 2.3 bits; conditional E-value: 0.31
PF02216 36 ddPsrsqevlaEakklnd 53
d+P+ + + E+kkl
ACF56707.1 262 DHPDHLKHIKEESKKLQR 279
89*************975 PP
>> PF12436 Ubiquitin-specific protease 7
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 2.0 0.6 0.33 9.9e+02 2 10 .. 260 268 .. 259 269 .. 0.86
Alignments for each domain:
== domain 1 score: 2.0 bits; conditional E-value: 0.33
PF12436 2 eeDvPeHlp 10
e D+P+Hl+
ACF56707.1 260 EIDHPDHLK 268
78*****96 PP
>> PF07708 Tash protein PEST motif
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 1.8 0.2 0.54 1.6e+03 5 12 .. 254 261 .. 254 262 .. 0.94
Alignments for each domain:
== domain 1 score: 1.8 bits; conditional E-value: 0.54
PF07708 5 PETItvEl 12
PE++ +E+
ACF56707.1 254 PEIFDLEI 261
9******9 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (289 residues)
Target model(s): 11912 (2158902 nodes)
Passed MSV filter: 396 (0.0332438); expected 238.2 (0.02)
Passed bias filter: 313 (0.026276); expected 238.2 (0.02)
Passed Vit filter: 33 (0.00277032); expected 11.9 (0.001)
Passed Fwd filter: 33 (0.00277032); expected 0.1 (1e-05)
Initial search space (Z): 100000 [as set by --Z on cmdline]
Domain search space (domZ): 33 [number of targets reported over threshold]
# CPU time: 0.23u 0.05s 00:00:00.28 Elapsed: 00:00:00
# Mc/sec: 2712.71
//