RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= ACF55245.1 spne4 ACF55245.1 GIB00761CH01 "Transcriptional
activator TenA"
         (230 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF03070 TENA_THI-4 "TENA/THI-4/PQQC family"                           104   2e-25

>PF03070 TENA_THI-4 "TENA/THI-4/PQQC family"
          Length = 208

 Score =  104 bits (259), Expect = 2e-25
 Identities = 65/200 (32%), Positives = 107/200 (53%), Gaps = 2/200 (1%)

Query: 15  WQASFHHPFILQLQEGNLEPAIFRYYLIQDAYYLKAFSEIYHLLADKTSNQEMKRLLKQN 74
           W+A   HPF+  L +G L    FRYYLIQD  YLK F+    L A K  + E +R L +N
Sbjct: 7   WEAYTEHPFVQALADGTLPKEKFRYYLIQDYLYLKHFARYLALAAAKAPDLETRRELLEN 66

Query: 75  AQGLVEGELFIRQQFFKELEISDQEMEQHPIAPTCYHYISHIYRQFAEPNLAIAFASLLP 134
               + GEL +  +F + L +  +E+E     P    Y+ ++       +L    A+LLP
Sbjct: 67  LLDEIGGELELHLRFAEALGLDREELENAEPLPATRAYVDYLLDVARSGSLLEGLAALLP 126

Query: 135 CPWLYHDIGKSL--NLKPSPNPLYQQWIETYITDELEQQIREEGALVNQLYRESDETDKQ 192
           C W Y +IGK L   L+      Y++WI+ Y ++E E+ + E   L+++L   + E +++
Sbjct: 127 CEWGYLEIGKRLAEELRLDEGAPYREWIDNYSSEEFEEAVEELEELLDELAASASEEERE 186

Query: 193 KMLDAFHISVHMEAKFWEMA 212
           ++ + F  ++ +E  FW+MA
Sbjct: 187 ELEEIFLKALELEYDFWDMA 206


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.329    0.144    0.430 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 10,203,063
Number of extensions: 539940
Number of successful extensions: 83313
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 1535
Number of HSP's successfully gapped: 247
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.3 bits)