RPS-BLAST 2.2.16 [Mar-25-2007]

Database: 40scop73nmM 
           9549 sequences; 1,678,726 total letters

Searching..................................................done

Query= ACF56071.1 spne4 atpC GIB00761CH01 "ATP synthase F0, C chain"
         (66 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

1ijpA [f.17.1.1] ATP SYNTHASE                                          52   7e-10

>1ijpA [f.17.1.1] ATP SYNTHASE
          Length = 79

 Score = 51.7 bits (124), Expect = 7e-10
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 13 MGVSVGEGLLMNGLFKSVARQPDMLSEFRSLMFLGVAFIEGTFFVTLVFSFII 65
          +G ++G G+L     +  ARQPD++   R+  F+ +  ++    + +     +
Sbjct: 22 IGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIAMIAVGLGLYV 74


  Database: 40scop73nmM
    Posted date:  Nov 2, 2009 11:39 AM
  Number of letters in database: 1,678,726
  Number of sequences in database:  9549
  
Lambda     K      H
   0.317    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9549
Number of Hits to DB: 10,406,074
Number of extensions: 737188
Number of successful extensions: 3048
Number of sequences better than 1.0e-03: 9
Number of HSP's gapped: 2975
Number of HSP's successfully gapped: 72
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.7 bits)