# hmmscan :: search sequence(s) against a profile HMM database # HMMER 3.0b2 (June 2009); http://hmmer.org/ # Copyright (C) 2009 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: /home/niguts/usr08/shisakam/FASTA/gib_30301.fasta # target HMM database: /home/niguts/usr08/shisakam/PFAM/ver24.0/Pfam-A.hmm # sequence search space set to: 100000 # set reporting thresholds to: GA cutoffs # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: AAZ54369.1 [L=307] Description: tfus0 AAZ54369.1 GIB00263CH01 "hypothetical protein" Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.41 12.0 0.1 0.41 12.0 0.1 1.7 1 PF06097 Bacterial protein of unknown function (DUF945) 3.8 9.8 1.1 19 7.6 0.8 2.3 1 PF07210 Protein of unknown function (DUF1416) 4.3 9.5 0.0 11 8.2 0.0 1.8 1 PF04335 VirB8 protein 8.4 7.7 0.0 12 7.2 0.0 1.1 1 PF11940 Domain of unknown function (DUF3458) 8.5 8.4 0.0 14 7.7 0.0 1.3 1 PF06532 Protein of unknown function (DUF1109) 13 8.1 5.7 5.5 9.3 0.1 2.8 2 PF10099 Anti-sigma-K factor rskA 14 8.4 0.1 41 6.9 0.0 1.8 1 PF11367 Protein of unknown function (DUF3168) 22 8.0 0.3 55 6.8 0.2 1.6 1 PF09990 Predicted membrane protein (DUF2231) 23 7.8 0.2 46 6.8 0.1 1.4 1 PF07131 Protein of unknown function (DUF1382) 25 7.0 0.6 48 6.1 0.4 1.4 1 PF11772 DNA-directed RNA polymerase subunit beta 25 7.6 0.0 48 6.7 0.0 1.4 1 PF12279 Protein of unknown function (DUF3619) 51 5.8 0.1 1e+02 4.8 0.1 1.5 1 PF11249 Protein of unknown function (DUF3047) 54 6.9 0.0 1.2e+02 5.9 0.0 1.5 1 PF06749 Protein of unknown function (DUF1218) 54 6.2 0.1 1.2e+02 5.1 0.0 1.6 1 PF12555 Thiamine pyrophosphokinase C terminal 65 6.5 0.6 3.2e+02 4.3 0.0 2.3 1 PF00379 Insect cuticle protein 76 5.9 0.2 1.6e+02 4.8 0.1 1.5 1 PF08140 Crustacean cuticle protein repeat 99 5.5 0.0 1.9e+02 4.6 0.0 1.4 1 PF07765 KIP1-like protein 1.1e+02 5.1 0.0 1.7e+02 4.4 0.0 1.2 1 PF09201 SRX 1.4e+02 5.6 6.8 30 7.7 0.6 2.6 1 PF06280 Fn3-like domain (DUF1034) 1.6e+02 4.8 0.0 2.8e+02 4.0 0.0 1.3 1 PF10177 Uncharacterised conserved protein (DUF2371) 1.7e+02 4.5 0.2 3.3e+02 3.6 0.1 1.4 1 PF10831 Protein of unknown function (DUF2556) 1.8e+02 4.2 0.0 3.1e+02 3.4 0.0 1.3 1 PF01973 Protein of unknown function DUF115 1.8e+02 4.7 0.0 3.7e+02 3.7 0.0 1.5 1 PF04715 Anthranilate synthase component I, N terminal regio 1.9e+02 3.6 0.1 2.5e+02 3.2 0.1 1.2 1 PF06800 Sugar transport protein 2e+02 4.3 0.1 4.5e+02 3.2 0.1 1.5 1 PF05480 Staphylococcus haemolytic protein 2.2e+02 4.3 0.0 3.8e+02 3.5 0.0 1.3 1 PF05656 Protein of unknown function (DUF805) 2.3e+02 4.6 0.2 4.7e+02 3.6 0.2 1.4 1 PF07571 Protein of unknown function (DUF1546) 3.4e+02 3.8 2.5 8.6e+02 2.5 1.7 1.6 1 PF11127 Protein of unknown function (DUF2892) 4.3e+02 3.1 0.1 8.1e+02 2.3 0.1 1.3 1 PF11848 Domain of unknown function (DUF3368) 7.8e+02 2.9 2.3 1.5e+03 1.9 1.6 1.4 1 PF11282 Protein of unknown function (DUF3082) 9e+02 2.5 3.0 1.5e+03 1.8 0.0 2.8 1 PF04671 Erythrocyte membrane-associated giant protein antig 1.2e+03 1.9 0.0 1.7e+03 1.4 0.0 1.4 1 PF08615 Ribonuclease H2 non-catalytic subunit (Ylr154p-like 1.6e+03 2.2 4.4 3.2e+03 1.3 3.1 1.4 1 PF03733 Domain of unknown function (DUF307) 2.2e+03 0.9 5.5 3.9e+03 0.1 3.8 1.3 1 PF09976 Uncharacterized protein conserved in bacteria (DUF2 2.3e+03 0.6 3.3 3.5e+03 0.1 2.3 1.2 1 PF04156 IncA protein 5.8e+03 0.2 8.1 1.9e+03 1.8 0.5 3.0 2 PF06715 Gp5 C-terminal repeat (3 copies) Domain and alignment annotation for each model: >> PF06097 Bacterial protein of unknown function (DUF945) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.1 0.00015 0.41 140 222 .. 144 225 .. 133 264 .. 0.89 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 0.00015 PF06097 140 ysgstdseltlaafdyeedegtklsfsglslegdvdkdlkavslsvnapslqlkleqkeqlalknlkld.gdlkkgksdlwlGd 222 +g++d++ a +d+ ++++++ ++++e+++ +++ +++ ++ ps+ ++ + ++++l++++++ ++ +++ + +G+ AAZ54369.1 144 VTGDVDVTGVSARVDA-STDTGEIRLADVTGEITAESATGRITAAGSGPSAVVTS-DTGEINLEDFQAAdVQATSAIGAIRIGS 225 5799999999999999.**************************************.**********998555555555577775 PP >> PF07210 Protein of unknown function (DUF1416) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 0.8 0.0068 19 9 42 .. 148 181 .. 139 243 .. 0.92 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0068 PF07210 9 tviqGrvlrdgepvagayvRLLdssgeFtaevvt 42 + ++G+ r +++ ++ +RL d +ge tae t AAZ54369.1 148 VDVTGVSARVDASTDTGEIRLADVTGEITAESAT 181 55899999999999*****************665 PP >> PF04335 VirB8 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 0.0 0.0039 11 2 41 .. 5 46 .. 4 92 .. 0.73 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.0039 ----------------------..------------------ CS PF04335 2 arqfeadrigsarrqrrrawlv..aivalliavlavlavvvl 41 ar ++a+ ++ r +r r+wlv aiv+l+ + vl++ + AAZ54369.1 5 ARGLYASSSKEPRGRRGRWWLVigAIVGLAALGTGVLGILTT 46 67778888899999********44444444444444444443 PP >> PF11940 Domain of unknown function (DUF3458) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 0.0 0.0043 12 74 113 .. 57 97 .. 55 117 .. 0.83 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.0043 ---SSSEEE----HHHHHHHHHH-S-HH.HHHHHHHHHHHH CS PF11940 74 gFSAPVkleydlsdeellfLlahdsDpf.nRweagqqLakr 113 +F AP +le d ++e ++L+a d+D + +R + +++++ AAZ54369.1 57 EFPAPSRLEIDNNTEGSVTLVAEDTDTVtVRVDVWSSMMSQ 97 799***********************973577777777766 PP >> PF06532 Protein of unknown function (DUF1109) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 0.0 0.0052 14 71 105 .. 12 46 .. 2 57 .. 0.77 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0052 PF06532 71 rlsrPggerrrallllalplallwlaallellaap 105 P+g+r+r++l++ +++ l++l + + +++ AAZ54369.1 12 SSKEPRGRRGRWWLVIGAIVGLAALGTGVLGILTT 46 5668****************999998876665553 PP >> PF10099 Anti-sigma-K factor rskA # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.1 0.002 5.5 26 97 .. 15 88 .. 4 99 .. 0.50 2 ? 0.5 0.1 1 2.9e+03 67 67 .. 176 176 .. 104 217 .. 0.59 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.002 PF10099 26 arlwrrlrrWrglal.aaaAaaavlalalllv...qataaaaqpaaapalvavlasadgqpalvvsvdadkgaltl 97 +++ rr r W +++ + + aa+ ++++l+ ++t++ ++ +++ ++ ++ + +++v+ d d+ ++++ AAZ54369.1 15 EPRGRRGRWWLVIGAiV-GLAALGTGVLGILTtavSETTTDTTEF-PAPSRLEIDNNTEGSVTLVAEDTDTVTVRV 88 33333556677666643.333333333333333533333333333.333334444446666666666656555544 PP == domain 2 score: 0.5 bits; conditional E-value: 1 PF10099 67 a 67 + AAZ54369.1 176 T 176 1 PP >> PF11367 Protein of unknown function (DUF3168) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 0.0 0.015 41 49 63 .. 79 93 .. 70 97 .. 0.86 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.015 PF11367 49 pdadrvrvQidvyat 63 +d+d v+v++dv+++ AAZ54369.1 79 EDTDTVTVRVDVWSS 93 599**********86 PP >> PF09990 Predicted membrane protein (DUF2231) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 0.2 0.02 55 5 38 .. 21 54 .. 19 59 .. 0.82 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.02 PF09990 5 swwnllaalvigflavaaGlvelllaepsiraks 38 + w l++++++g++a +G++ +l+ s++ ++ AAZ54369.1 21 GRWWLVIGAIVGLAALGTGVLGILTTAVSETTTD 54 6799****************99998866665555 PP >> PF07131 Protein of unknown function (DUF1382) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.8 0.1 0.017 46 29 44 .. 239 254 .. 234 261 .. 0.86 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.017 PF07131 29 iPvvtDeEFatLaail 44 i v tD EF+tL a AAZ54369.1 239 ITVTTDTEFQTLHATT 254 789*********8864 PP >> PF11772 DNA-directed RNA polymerase subunit beta # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 0.4 0.017 48 12 26 .. 25 39 .. 23 47 .. 0.88 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.017 PF11772 12 lviGlmvGYgviGdG 26 lviG++vG +++G G AAZ54369.1 25 LVIGAIVGLAALGTG 39 8************99 PP >> PF12279 Protein of unknown function (DUF3619) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 0.0 0.017 48 59 104 .. 12 57 .. 2 60 .. 0.80 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.017 PF12279 59 sggallerggswlrrlalalplaaLvagLvginvwqdqqrieelae 104 s ++ r+g w+ ++ ++ laaL g++gi + + +++++e AAZ54369.1 12 SSKEPRGRRGRWWLVIGAIVGLAALGTGVLGILTTAVSETTTDTTE 57 3444447899**********************99999888888776 PP >> PF11249 Protein of unknown function (DUF3047) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 0.1 0.037 1e+02 159 183 .] 237 261 .. 227 261 .. 0.90 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.037 PF11249 159 vgvalmtDsdntgeeatayygdiel 183 ++++ tD++++ +at+ +g+iel AAZ54369.1 237 GAITVTTDTEFQTLHATTAIGNIEL 261 5799*******************97 PP >> PF06749 Protein of unknown function (DUF1218) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 0.0 0.042 1.2e+02 22 64 .. 10 52 .. 1 64 [. 0.81 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.042 PF06749 22 cgkalspkakrrralavvlfviswvlfvvavalllagalrnae 64 +++ p+ r r++ v+ +++ + +++++v+ +l+ a++++ AAZ54369.1 10 ASSSKEPRGRRGRWWLVIGAIVGLAALGTGVLGILTTAVSETT 52 455566778999**************************99986 PP >> PF12555 Thiamine pyrophosphokinase C terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.0 0.043 1.2e+02 16 29 .. 22 35 .. 8 38 .. 0.86 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.043 PF12555 16 llllvlAaLvAlav 29 ++lv++a+v la+ AAZ54369.1 22 RWWLVIGAIVGLAA 35 59********9998 PP >> PF00379 Insect cuticle protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.3 0.0 0.12 3.2e+02 23 42 .. 67 86 .. 60 87 .. 0.90 Alignments for each domain: == domain 1 score: 4.3 bits; conditional E-value: 0.12 PF00379 23 ggvvkGsYsyvdpdGkvrtV 42 + ++ Gs ++v++d ++tV AAZ54369.1 67 DNNTEGSVTLVAEDTDTVTV 86 56899**************9 PP >> PF08140 Crustacean cuticle protein repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.8 0.1 0.059 1.6e+02 25 34 .. 189 198 .. 180 201 .. 0.87 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.059 PF08140 25 iGpSGaVlsd 34 GpS++V+sd AAZ54369.1 189 SGPSAVVTSD 198 7********9 PP >> PF07765 KIP1-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.0 0.067 1.9e+02 22 47 .. 65 90 .. 48 95 .. 0.87 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.067 PF07765 22 eldekvkemlklieeeadsfakrAem 47 e+d++++ + l+ e++d+++ r ++ AAZ54369.1 65 EIDNNTEGSVTLVAEDTDTVTVRVDV 90 89******************999876 PP >> PF09201 SRX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 0.0 0.062 1.7e+02 86 131 .. 71 116 .. 61 122 .. 0.81 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.062 S--HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHT---TT--TTS-- CS PF09201 86 eesleLnneaeqvldlalkLWdsLdlnesilknakGkakknehnyv 131 e s++L +e +++++ + +W s+ + s +++G + + + n++ AAZ54369.1 71 EGSVTLVAEDTDTVTVRVDVWSSMMSQPSWDTETEGDTLRLAANCS 116 6899*******************98777776677777777666666 PP >> PF06280 Fn3-like domain (DUF1034) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 0.6 0.011 30 35 82 .. 45 92 .. 36 100 .. 0.70 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.011 PF06280 35 tdlaakeegslilkaaspeakavtfepstvtvpanssatvtvtldlps 82 t+ + ++ + +++ +a + + ++++ +vt+ a+ + tvtv +d+ s AAZ54369.1 45 TTAVSETTTDTTEFPAPSRLEIDNNTEGSVTLVAEDTDTVTVRVDVWS 92 44443444444444444444467888899****************966 PP >> PF10177 Uncharacterised conserved protein (DUF2371) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.0 0.0 0.1 2.8e+02 43 95 .. 25 77 .. 20 86 .. 0.88 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.1 PF10177 43 lilGvlvllvGiamavlGYwpksaeatspaatnlsssesselrsesegvlvrl 95 l++G++v l+ ++ vlG + ++t++ +t+ +++ e+ +++eg+++ + AAZ54369.1 25 LVIGAIVGLAALGTGVLGILTTAVSETTTDTTEFPAPSRLEIDNNTEGSVTLV 77 799*******************9999999999999999999999999887754 PP >> PF10831 Protein of unknown function (DUF2556) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.1 0.12 3.3e+02 3 13 .. 20 30 .. 19 36 .. 0.82 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.12 PF10831 3 rkyWWlvvfav 13 r WWlv+ a+ AAZ54369.1 20 RGRWWLVIGAI 30 557*****987 PP >> PF01973 Protein of unknown function DUF115 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 0.0 0.11 3.1e+02 53 91 .. 175 213 .. 173 225 .. 0.88 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.11 PF01973 53 iaadtalkaLlkegIkPDivvslDrqeityevfkeakke 91 i+a +a+ +g P vv+ D ei+ e+f+ a+ + AAZ54369.1 175 ITAESATGRITAAGSGPSAVVTSDTGEINLEDFQAADVQ 213 789999999**********************99988765 PP >> PF04715 Anthranilate synthase component I, N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.0 0.13 3.7e+02 25 63 .. 178 216 .. 167 258 .. 0.77 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.13 PF04715 25 eggegrysfigadplatlkakdgeislegdegekleeee 63 e++ gr g p a++++ +gei le+ + ++++++ AAZ54369.1 178 ESATGRITAAGSGPSAVVTSDTGEINLEDFQAADVQATS 216 35569************************5555555544 PP >> PF06800 Sugar transport protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.1 0.089 2.5e+02 97 131 .. 23 57 .. 20 97 .. 0.84 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.089 PF06800 97 WstsvqvilGllaliliiiGvvltslkekkeakle 131 W + i+Gl+al + G++ t+++e++ +++e AAZ54369.1 23 WWLVIGAIVGLAALGTGVLGILTTAVSETTTDTTE 57 77788899******************999887654 PP >> PF05480 Staphylococcus haemolytic protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.1 0.16 4.5e+02 21 36 .. 34 49 .. 33 51 .. 0.90 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.16 PF05480 21 akLGtSIvdIvanGvd 36 a LGt++++I+ +v+ AAZ54369.1 34 AALGTGVLGILTTAVS 49 68*********99997 PP >> PF05656 Protein of unknown function (DUF805) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 0.0 0.14 3.8e+02 10 36 .. 19 47 .. 14 76 .. 0.59 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.14 PF05656 10 sRseywwfllfnillsivllildill..s 36 +R +w+++ +++ l+++ +++ +l + AAZ54369.1 19 RRGRWWLVIGAIVGLAALGTGVLGILttA 47 44555555555555555555555555230 PP >> PF07571 Protein of unknown function (DUF1546) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.2 0.17 4.7e+02 67 81 .. 27 41 .. 23 48 .. 0.85 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.17 PF07571 67 yGAilGLsalgseav 81 GAi+GL+alg+ ++ AAZ54369.1 27 IGAIVGLAALGTGVL 41 6**********9776 PP >> PF11127 Protein of unknown function (DUF2892) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 1.7 0.31 8.6e+02 31 50 .. 23 42 .. 17 48 .. 0.70 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.31 PF11127 31 awgwllglvGavllvtgitg 50 +w+++ ++vG++ l tg++g AAZ54369.1 23 WWLVIGAIVGLAALGTGVLG 42 45777777777777777766 PP >> PF11848 Domain of unknown function (DUF3368) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.1 0.29 8.1e+02 3 15 .. 38 50 .. 38 54 .. 0.91 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 0.29 PF11848 3 tGTLGvLllAkrk 15 tG+LG+L A+++ AAZ54369.1 38 TGVLGILTTAVSE 50 8******999976 PP >> PF11282 Protein of unknown function (DUF3082) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.9 1.6 0.55 1.5e+03 55 70 .. 30 45 .. 26 48 .. 0.91 Alignments for each domain: == domain 1 score: 1.9 bits; conditional E-value: 0.55 PF11282 55 vvGlcfLatfvfafva 70 +vGl++L+t+v ++++ AAZ54369.1 30 IVGLAALGTGVLGILT 45 89***********987 PP >> PF04671 Erythrocyte membrane-associated giant protein antigen 332 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.0 0.53 1.5e+03 7 17 .. 292 302 .. 292 302 .. 0.94 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 0.53 PF04671 7 iVEegSvTEEi 17 ++E S+T++i AAZ54369.1 292 VIEARSDTGDI 302 89*******98 PP >> PF08615 Ribonuclease H2 non-catalytic subunit (Ylr154p-like) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.4 0.0 0.6 1.7e+03 47 100 .. 123 176 .. 52 252 .. 0.79 Alignments for each domain: == domain 1 score: 1.4 bits; conditional E-value: 0.6 PF08615 47 GrklvGqelslpegyrgivlsttnrpnkgsddeqeeeddedgegeetartksle 100 Gr+ v e+++peg + +v ++t + ++ +++ + ++++ge ++t +++ AAZ54369.1 123 GRCSVDYEVAVPEGTEVSVHTVTGDVDVTGVSARVDASTDTGEIRLADVTGEIT 176 667777788999999999999998888775555555555556666665555543 PP >> PF03733 Domain of unknown function (DUF307) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.3 3.1 1.2 3.2e+03 7 30 .. 23 46 .. 23 53 .. 0.89 Alignments for each domain: == domain 1 score: 1.3 bits; conditional E-value: 1.2 PF03733 7 WfilfGlwlalghllaglllfiti 30 W++++G ++ l++l +g+l ++t AAZ54369.1 23 WWLVIGAIVGLAALGTGVLGILTT 46 9*****************988886 PP >> PF09976 Uncharacterized protein conserved in bacteria (DUF2133) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 3.8 1.4 3.9e+03 16 29 .. 24 37 .. 23 38 .. 0.90 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 1.4 PF09976 16 wiivgavlalagva 29 w+++ga+++la+++ AAZ54369.1 24 WLVIGAIVGLAALG 37 99*********985 PP >> PF04156 IncA protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 2.3 1.2 3.5e+03 18 38 .. 25 45 .. 24 51 .. 0.56 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 1.2 PF04156 18 liasGiallvlfasslgvlis 38 l++++i++l++++++ ++++ AAZ54369.1 25 LVIGAIVGLAALGTGVLGILT 45 566666666666666333333 PP >> PF06715 Gp5 C-terminal repeat (3 copies) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 1.0 1.3 3.5e+03 1 15 [. 72 86 .. 72 90 .. 0.87 2 ? 1.8 0.5 0.67 1.9e+03 5 14 .. 142 151 .. 139 151 .. 0.79 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 1.3 -------SS------ CS PF06715 1 GnetltVkGNrTvtV 15 G++tl+ +++ TvtV AAZ54369.1 72 GSVTLVAEDTDTVTV 86 789999999999999 PP == domain 2 score: 1.8 bits; conditional E-value: 0.67 ---SS----- CS PF06715 5 ltVkGNrTvt 14 +tV+G++ vt AAZ54369.1 142 HTVTGDVDVT 151 8999998887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (307 residues) Target model(s): 11912 (2158902 nodes) Passed MSV filter: 423 (0.0355104); expected 238.2 (0.02) Passed bias filter: 271 (0.0227502); expected 238.2 (0.02) Passed Vit filter: 36 (0.00302216); expected 11.9 (0.001) Passed Fwd filter: 36 (0.00302216); expected 0.1 (1e-05) Initial search space (Z): 100000 [as set by --Z on cmdline] Domain search space (domZ): 36 [number of targets reported over threshold] # CPU time: 0.25u 0.05s 00:00:00.30 Elapsed: 00:00:00 # Mc/sec: 2651.13 //