RPS-BLAST 2.2.16 [Mar-25-2007]

Database: Pfam-A 
           11,912 sequences; 2,039,872 total letters

Searching..................................................done

Query= AAZ55697.1 tfus0 AAZ55697.1 GIB00263CH01 "ABC-type Mn/Zn
transport systems ATPase component"
         (243 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PF00005 ABC_tran "ABC transporter"                                     67   2e-14

>PF00005 ABC_tran "ABC transporter"
          Length = 123

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 6/125 (4%)

Query: 46  STLLKTIAELVTPQSGHVRIHG-LPPAQARKNGLLGYVPQSEQVDWAFP-VRVIDVVMMG 103
           STLL+ +A L+ P SG + + G + P + RK  + GYV Q   +   FP + V + +  G
Sbjct: 1   STLLRLLAGLLKPTSGKILLDGVISPLELRKLRI-GYVFQDPAL---FPHLTVRENIAFG 56

Query: 104 RYGHMGLTRRPRKSDRDAVAEALERTGLTDLAHRQIGALSGGQRKRAFIARGIAQGATVF 163
                 L    +K  ++ + EALER GL    +R    LSGGQR+R  IAR + +   V 
Sbjct: 57  LKNDEKLKEIKKKEAKEEILEALERVGLLKFLYRYPHELSGGQRQRVAIARALIKEPKVL 116

Query: 164 LLDEP 168
           LLDEP
Sbjct: 117 LLDEP 121


  Database: Pfam-A
    Posted date:  Oct 30, 2009  9:48 AM
  Number of letters in database: 2,039,872
  Number of sequences in database:  11,912
  
Lambda     K      H
   0.321    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11912
Number of Hits to DB: 16,800,368
Number of extensions: 964589
Number of successful extensions: 119611
Number of sequences better than 1.0e-03: 10
Number of HSP's gapped: 2474
Number of HSP's successfully gapped: 203
Length of database: 100,000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)